Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_G03
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 51 1e-06
04_03_0649 - 18402976-18403220,18403305-18404499 40 0.002
10_08_0009 + 14075929-14076789 33 0.30
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 32 0.53
12_01_0197 + 1456296-1456668,1456930-1458746 32 0.53
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 32 0.53
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 32 0.70
03_02_0198 + 6344952-6347483 31 0.92
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 31 1.2
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 31 1.6
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 30 2.8
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 29 3.7
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 4.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 372 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 539
+S+K+ G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 540 IDLAWQFP 563
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 480 ARTAFINSGVLLAEQYGFDGIDLAWQFP 563
+R AFI + V +A + GFDG+D+AW+FP
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFP 170
>10_08_0009 + 14075929-14076789
Length = 286
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 366 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 533
A+ + KA +P L+V+L++GGD T + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 534 DGIDLAWQ 557
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 32.3 bits (70), Expect = 0.53
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 369 SHGSCRVFGLCPGXRLRTPAXRCQAGYRXSRTAKWVQNDRAG 244
S+ C FGLC T RC G+ + A+W + +G
Sbjct: 307 SYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSG 348
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Frame = -3
Query: 447 LVLRYQRRHXXXXXX*DQGTWLSSW*S-------HGSCRVFGLCPGXRLRTPAXRCQAGY 289
L L Y GTW SW + HG C +G+C TP C GY
Sbjct: 176 LTLDYDGNLRLYSLNNSDGTWTISWIAQPQTCMTHGLCGPYGIC--HYSPTPRCSCPPGY 233
Query: 288 RXSRTAKWVQ 259
+ W Q
Sbjct: 234 KMRNPGNWTQ 243
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Frame = -3
Query: 447 LVLRYQRRHXXXXXX*DQGTWLSSW*S-------HGSCRVFGLCPGXRLRTPAXRCQAGY 289
L L Y GTW SW + HG C +G+C TP C GY
Sbjct: 581 LTLDYDGNLRLYSLNNSDGTWTISWIAQPQTCMTHGLCGPYGIC--HYSPTPRCSCPPGY 638
Query: 288 RXSRTAKWVQ 259
+ W Q
Sbjct: 639 KMRNPGNWTQ 648
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 31.9 bits (69), Expect = 0.70
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +3
Query: 423 GDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGS 602
G + TE Y A +I SG ++ Q G D + W+ + + + W
Sbjct: 431 GGSPTELITSYTESTGRPPALPRWITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQ 490
Query: 603 LWHGIKKTFGTTPV---DEKESEHREGFTALVRELKQ 704
W G +KT + + E + +H G+ LVR+L++
Sbjct: 491 DWVGQRKTSIGSQLWWNWEVDDDHYAGWNDLVRDLRR 527
>03_02_0198 + 6344952-6347483
Length = 843
Score = 31.5 bits (68), Expect = 0.92
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 366 HGSCRVFGLCPGXRLRTPAXRCQAGYRXSRTAKWVQNDRAG 244
+GSC FG+C P RC AG+ + +W + AG
Sbjct: 306 YGSCGPFGVCSNAT--NPECRCPAGFEPRSSEEWRLENAAG 344
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 369 SHGSCRVFGLCPGXRLRTPAXRCQAGYRXSRTAKWVQNDRA-GXRXNGSMRA*DALT 202
++ C FGLC T C G+ + A W D + G R N +R + T
Sbjct: 299 AYAKCGAFGLCDANAPSTSFCGCLRGFSPTSPAAWAMKDASGGCRRNVPLRCGNTTT 355
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = -3
Query: 393 GTWLSSW*SHGS-CRVFGLCPGXRL----RTPAXRCQAGYRXSRTAKWVQNDRA 247
G WL SW + C + GLC + TP C GY + W Q +A
Sbjct: 269 GEWLVSWVAISQPCNIHGLCGPNGICHYSPTPTCSCPPGYEMNSHGNWSQGCKA 322
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 366 HGSCRVFGLCPGXRLRTPAXRCQAGYRXSRTAKWVQNDRAG 244
+ C FGLC T C AG+ ++W D +G
Sbjct: 301 YAKCGAFGLCNEDTASTLFCSCMAGFSPVSPSRWSMRDTSG 341
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 366 HGSCRVFGLCPGXRLRTPAXRCQAGYRXSRTAKW--VQNDRAGXRXNGSM 223
+G C FGLC T C G+ + + W +++ AG R + ++
Sbjct: 302 YGKCGAFGLCDAGAASTSFCSCVEGFTPASPSPWKKMRDTSAGCRRDAAL 351
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -1
Query: 653 LLIDWRGAECLLNSMPKRSPGRA---DLLRLNSWELPGEVNSIETILFSQQHSGINE 492
LL D R + L++ KR+ G D+ RLNSW L V S+ + Q+ S ++E
Sbjct: 1503 LLPDLRSKQLLVHFFLKRTVGNLSDDDVARLNSWALGLRVLSLLPLPSQQRCSSLHE 1559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,121
Number of Sequences: 37544
Number of extensions: 408168
Number of successful extensions: 1053
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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