Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G02
         (1068 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.017
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.64 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   0.91 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   7.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 960  PPPPPPXPXXXXXXFFFFXXXPPPPPPXXXKKKK 1061
            PPPPPP P             PPPPPP   KK+K
Sbjct: 9    PPPPPPPPGFEPPS-----QPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 960  PPPPPPXPXXXXXXFFFFXXXPPPPPP 1040
            PPPPPP P             PPPPPP
Sbjct: 761  PPPPPPPPGVAGAG----PPPPPPPPP 783


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect(2) = 0.91
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 1023 PPPPPPXXXKKK 1058
            PPPPPP   +KK
Sbjct: 1097 PPPPPPAEVEKK 1108



 Score = 23.4 bits (48), Expect(2) = 0.91
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 960  PPPPPPXP 983
            PPPPPP P
Sbjct: 1095 PPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 960 PPPPPPXP 983
           PPPPPP P
Sbjct: 907 PPPPPPLP 914



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 1011 FXXXPPPPPP 1040
            F   PPPPPP
Sbjct: 944  FPPPPPPPPP 953


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 6.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 960 PPPPPPXP 983
           PPPPPP P
Sbjct: 189 PPPPPPPP 196



 Score = 23.4 bits (48), Expect(2) = 6.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 960 PPPPPPXP 983
           PPPPPP P
Sbjct: 190 PPPPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 6.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 1023 PPPPPP 1040
            PPPPPP
Sbjct: 192  PPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 6.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 1023 PPPPPP 1040
            PPPPPP
Sbjct: 238  PPPPPP 243


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 7.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 960 PPPPPPXP 983
           PPPPPP P
Sbjct: 306 PPPPPPPP 313



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 1023 PPPPPP 1040
            PPPPPP
Sbjct: 309  PPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,948
Number of Sequences: 5004
Number of extensions: 19590
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)