Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F24
         (1004 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5BXW2 Cluster: SJCHGC01957 protein; n=3; Eukaryota|Rep...    35   3.8  
UniRef50_O97214 Cluster: Putative uncharacterized protein L4830....    29   4.2  
UniRef50_Q6C9I8 Cluster: Similar to sp|P41832 Saccharomyces cere...    32   5.2  
UniRef50_Q0D4Y8 Cluster: Os07g0596300 protein; n=7; Eukaryota|Re...    28   5.5  
UniRef50_Q4X6Y4 Cluster: Putative uncharacterized protein; n=1; ...    34   6.6  

>UniRef50_Q5BXW2 Cluster: SJCHGC01957 protein; n=3; Eukaryota|Rep:
           SJCHGC01957 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 180

 Score = 34.7 bits (76), Expect = 3.8
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +2

Query: 749 FXXFFFFFFFXLXXXXXXGGGGGGXXXXKXXXXXXGG 859
           F  FFFFFFF        GGGGGG           GG
Sbjct: 25  FFFFFFFFFFFFFFFFFLGGGGGGPPFFAPPKKKGGG 61


>UniRef50_O97214 Cluster: Putative uncharacterized protein L4830.10;
           n=3; Leishmania|Rep: Putative uncharacterized protein
           L4830.10 - Leishmania major
          Length = 816

 Score = 28.7 bits (61), Expect(2) = 4.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 606 PPXXXXXXGGXXXXXXXXPPPPPPP 680
           PP      GG        PPPPPPP
Sbjct: 634 PPMIPLGSGGSAPPRLPPPPPPPPP 658



 Score = 24.6 bits (51), Expect(2) = 4.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 660 PPPPPPPXXXK 692
           PPPPPPP   K
Sbjct: 682 PPPPPPPTSSK 692


>UniRef50_Q6C9I8 Cluster: Similar to sp|P41832 Saccharomyces
            cerevisiae YNL271c BNI1 regulator of budding; n=1;
            Yarrowia lipolytica|Rep: Similar to sp|P41832
            Saccharomyces cerevisiae YNL271c BNI1 regulator of
            budding - Yarrowia lipolytica (Candida lipolytica)
          Length = 1851

 Score = 31.9 bits (69), Expect(2) = 5.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 583  GXPXPPXXPPXXXXXXXGXXXXXXXXPPPPPXP 681
            G P PP  PP       G        PPPPP P
Sbjct: 1041 GGPPPPPPPPPPPMFTGGPPPMFTGGPPPPPPP 1073



 Score = 21.0 bits (42), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 661  PPPPPXPXXXKXF 699
            PPPPP P     F
Sbjct: 1101 PPPPPPPPLPPGF 1113


>UniRef50_Q0D4Y8 Cluster: Os07g0596300 protein; n=7; Eukaryota|Rep:
           Os07g0596300 protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 754

 Score = 28.3 bits (60), Expect(2) = 5.5
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 585 AAXPXXXPPXXXXXXGGXXXXXXXXPPPPPPP 680
           ++ P   PP      G         PPPPPPP
Sbjct: 2   SSIPPPPPPPPLMSFGAQTRTFVPPPPPPPPP 33



 Score = 24.6 bits (51), Expect(2) = 5.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 660 PPPPPPPXXXK 692
           PPPPPPP   K
Sbjct: 60  PPPPPPPPPLK 70


>UniRef50_Q4X6Y4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 272

 Score = 33.9 bits (74), Expect = 6.6
 Identities = 21/51 (41%), Positives = 21/51 (41%)
 Frame = -1

Query: 668 GGGXXXXXXXXPXXXXXXXGGXXGGXGXPPX*KKKKKKXXPPXFFFFXXPR 516
           GGG        P       GG  GG G PP  KKKKKK     F  F  PR
Sbjct: 178 GGGEKNKPPPPPPPKKKKRGG--GGGGAPPPQKKKKKKKKIFSFSLFPTPR 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,853,558
Number of Sequences: 1657284
Number of extensions: 8108896
Number of successful extensions: 146742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90978
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 95122559191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)