Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F24
         (1004 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2110|AAN09656.1|  968|Drosophila melanogaster CG15028-P...    25   1.8  
AE014298-2111|AAF48430.1|  858|Drosophila melanogaster CG15028-P...    25   1.8  

>AE014298-2110|AAN09656.1|  968|Drosophila melanogaster CG15028-PB,
           isoform B protein.
          Length = 968

 Score = 25.4 bits (53), Expect(2) = 1.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 630 GGXXXXXXXXPPPPPPP 680
           GG        PPPPPPP
Sbjct: 627 GGGAVPRPPPPPPPPPP 643



 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 660 PPPPPPPXXXK 692
           PPPPPPP   K
Sbjct: 635 PPPPPPPPPRK 645


>AE014298-2111|AAF48430.1|  858|Drosophila melanogaster CG15028-PA,
           isoform A protein.
          Length = 858

 Score = 25.4 bits (53), Expect(2) = 1.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 630 GGXXXXXXXXPPPPPPP 680
           GG        PPPPPPP
Sbjct: 517 GGGAVPRPPPPPPPPPP 533



 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 660 PPPPPPPXXXK 692
           PPPPPPP   K
Sbjct: 525 PPPPPPPPPRK 535


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,209,548
Number of Sequences: 53049
Number of extensions: 573948
Number of successful extensions: 15955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11530
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5099321547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)