Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F24
         (1004 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   9.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   9.1  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   9.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 582 GAAXPXXXPPXXXXXXGGXXXXXXXXPPPPPPP 680
           G   P    P      GG        PPPPPPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 582 GAAXPXXXPPXXXXXXGGXXXXXXXXPPPPPPP 680
           G   P    P      GG        PPPPPPP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 680 GXGGGGGXXXXXXXXPXXXXXXXGGXXGGXGXP 582
           G GGGGG        P       GG  GG G P
Sbjct: 838 GGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPP 870


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 582 GAAXPXXXPPXXXXXXGGXXXXXXXXPPPPPPP 680
           G   P    P      GG        PPPPPPP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,819
Number of Sequences: 27780
Number of extensions: 233625
Number of successful extensions: 4406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2624
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)