Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F23
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    28   0.11 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.2  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   7.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 97  RFKTQQWVTSKTHTSRPETPGPQPPS 174
           R +T  W++S +    P TP P PPS
Sbjct: 100 RQRTDDWLSSPSGNVPPLTPSPGPPS 125


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 204 GFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFN 314
           GF+++     KIV +S +     GH +  L+G  IFN
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFN 150


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 163 EAPESPVSKCVSSMSPIVV 107
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 145  PETPGPQPPSPCNVRPCVKTVSLC*RVVH 231
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 136 TSRPETPGPQPPSPC 180
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,581
Number of Sequences: 336
Number of extensions: 4303
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)