Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F23
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 171 1e-43
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 171 1e-43
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 4.7
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 4.7
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 4.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.7
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 4.7
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 4.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.7
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 6.1
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 26 8.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 8.1
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 26 8.1
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 171 bits (415), Expect = 1e-43
Identities = 77/104 (74%), Positives = 90/104 (86%)
Frame = +3
Query: 114 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 293
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 294 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTL 425
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL L
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNL 103
Score = 48.8 bits (111), Expect = 1e-06
Identities = 17/49 (34%), Positives = 34/49 (69%)
Frame = +1
Query: 427 MADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 573
M +G ++D+++P+G+LG ++ F+ GK+L+ TV+ + GEE +A +
Sbjct: 104 MTTDGTTKDDVRLPEGELGNEIEEGFEEGKDLIITVVSAMGEEIALACR 152
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 171 bits (415), Expect = 1e-43
Identities = 77/104 (74%), Positives = 90/104 (86%)
Frame = +3
Query: 114 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 293
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 294 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTL 425
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL L
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNL 103
Score = 49.2 bits (112), Expect = 8e-07
Identities = 17/49 (34%), Positives = 34/49 (69%)
Frame = +1
Query: 427 MADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 573
M +G ++D+++P+G+LG ++ FD G++L+ TV+ + GEE +A +
Sbjct: 104 MTTDGTTKDDVRLPEGELGNEIEEGFDEGRDLIITVVSAMGEETALACR 152
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 351 NMDVPHVKREDYQLTDISDDGYL 419
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 551 RSASSPSKQTQLSTNKPTQH 610
+S SSPS+ + LST+KP H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 174 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 326
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 267 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 386
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 383
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 206 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 301
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 611 NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 498
++ +V S + +LTA+ S+P S+V N+S P++ S
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSS 2595
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 526 CTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*FFTINNSYINVKHNIVY 684
C V+ E + NT D +N IG FF +N +++NVK ++Y
Sbjct: 219 CVVINKDSEFLQMCRPINTTQD--SNEHSIGSL---FFYLNYNFVNVKRQVIY 266
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 13 YDLTIGNSLRFCFRLKNPSVTYHS*PVVRFKTQ 111
Y T G +R+ ++ P + YH+ P VR+ TQ
Sbjct: 386 YFTTSGIQVRY-LKITEPKLNYHAMPWVRYVTQ 417
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 469 DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*F 636
D +L L T +GK C + +C++A + A + TNS F+ +F F
Sbjct: 2869 DSNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQDQFAGEWDTNSRFLAFASFHF 2924
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 643 INNSYINVKHNIVYKFNLKNEYXTEVVLGDRGAPPLXDV 759
+N + K IVY +LK E EVV +G P + +V
Sbjct: 82 VNGCVLYNKGKIVYADHLKPEVVMEVVEATKGNPNIANV 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,405
Number of Sequences: 5004
Number of extensions: 67787
Number of successful extensions: 316
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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