Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F23
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 168 5e-42
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 153 1e-37
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 3.3
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 3.3
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 3.3
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 3.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 3.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 3.3
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 3.3
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 168 bits (408), Expect = 5e-42
Identities = 78/100 (78%), Positives = 84/100 (84%)
Frame = +3
Query: 126 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 305
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 306 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTL 425
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +L
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSL 105
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 REDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 582
++DLK+PD +LG Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 114 KDDLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 153 bits (372), Expect = 1e-37
Identities = 70/100 (70%), Positives = 83/100 (83%)
Frame = +3
Query: 126 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 305
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 306 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTL 425
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +L
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSL 139
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 442 DLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 582
+L++DLK+P+GDLG +R + + +L V+ +CGEE ++ K +T
Sbjct: 146 ELKDDLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +1
Query: 667 KHNIVYKFNLKNEYXTEVVLGDRGAPPLXDVTRNTSPPHFADAFRSL 807
+H + + + ++ Y + +G PPL + PP D +R+L
Sbjct: 1219 RHQPIQRIDFESPYGSSSAIGSASTPPLPMQAPPSGPPTVIDGYRTL 1265
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +1
Query: 667 KHNIVYKFNLKNEYXTEVVLGDRGAPPLXDVTRNTSPPHFADAFRSL 807
+H + + + ++ Y + +G PPL + PP D +R+L
Sbjct: 1219 RHQPIQRIDFESPYGSSSAIGSASTPPLPMQAPPSGPPTVIDGYRTL 1265
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 SKTHTSRPETPGPQPPSPCNVRPCVKTV 207
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 SKTHTSRPETPGPQPPSPCNVRPCVKTV 207
S + T+ TPGP P +PC+ P V T+
Sbjct: 29 SASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 SKTHTSRPETPGPQPPSPCNVRPCVKTV 207
S + T+ TPGP P +PC+ P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 SKTHTSRPETPGPQPPSPCNVRPCVKTV 207
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 121 TSKTHTSRPETPGPQPPSPCNVRP 192
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,943,227
Number of Sequences: 27780
Number of extensions: 407682
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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