Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F17
         (892 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.4  
UniRef50_Q54RR9 Cluster: Protein kinase, TKL group; n=1; Dictyos...    34   5.6  
UniRef50_Q86BM7 Cluster: CG33125-PA; n=1; Drosophila melanogaste...    33   9.8  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +3

Query: 675 PDMIXYIDEXGQTTXRMQ 728
           PDMI YIDE GQTT RMQ
Sbjct: 347 PDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q54RR9 Cluster: Protein kinase, TKL group; n=1;
            Dictyostelium discoideum AX4|Rep: Protein kinase, TKL
            group - Dictyostelium discoideum AX4
          Length = 1761

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 368  PSGPYPLKYVLNTDPDEGPTANAKYSVEAKFNDYHFDYTSSQSSFVLDFSPPEQRCFKPC 547
            P+   P   +  ++ D     N   + +  FNDY+ DY +  +++  +F PP++    P 
Sbjct: 841  PTTQIPTSDIDTSNSDNNNNNNNNNTSDNNFNDYNNDYNNDYNNYETEFLPPKKTPPPPI 900

Query: 548  P 550
            P
Sbjct: 901  P 901


>UniRef50_Q86BM7 Cluster: CG33125-PA; n=1; Drosophila
           melanogaster|Rep: CG33125-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 1283

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 380 YPLKYVLNTDPDEGPTANAKYSVEAKFNDYHF-DYTSSQSSFVLDFSPPEQRCFKPCPK 553
           YP  Y    D  E PTA A  +   +F+DY + DY  S  +  + F  P+ + +K   K
Sbjct: 313 YPENYKKYRDYYEEPTAEAYQNPYEEFHDYEYPDYKQSSKAPPVPFPKPQPKYYKSYSK 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,369,026
Number of Sequences: 1657284
Number of extensions: 11505586
Number of successful extensions: 27434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27430
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)