Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F17
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   6.3  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    26   6.3  
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    26   8.3  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 281 PAATQPILRIIRHEGQYTICTKPSNVNNAPSGPYPLKYVLN 403
           P + QP+  I+  +  Y +  KP+ V   P+G Y    VL+
Sbjct: 99  PVSDQPV-GIVHEDESYVVIDKPAGVPVHPTGRYNHNTVLH 138


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 412 GICVQDVL*WVWTRRSVVDIGRFCTYCILSFVSYYSK 302
           G   +  L W WT      +G F T C+L     YS+
Sbjct: 243 GFLAKSYLGWRWTEYITSFMGFFSTLCLLFMKECYSR 279


>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +2

Query: 374 GPYPLKYVLNTDPDEGPT---ANAKYSVEAKFND 466
           GP    Y   ++PDE PT   A   Y    KF D
Sbjct: 152 GPSETPYDFTSEPDEAPTGMLARGHYEANGKFVD 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,288
Number of Sequences: 5004
Number of extensions: 47999
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)