Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F17
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0333 + 7566644-7566995,7567432-7567463,7568301-7568457,756...    31   1.6  
01_01_1015 + 8029884-8030676,8030755-8030771                           30   2.8  

>03_02_0333 +
           7566644-7566995,7567432-7567463,7568301-7568457,
           7568568-7568740,7568872-7568973,7569053-7569199,
           7569274-7570248
          Length = 645

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
 Frame = +2

Query: 281 PAATQPILRIIRH-EGQYTICTKPSNVNNAPSGPY--PLKYVLNTDPDEGPT-ANAKYSV 448
           PA T  +L    H  G Y +C    N+NN P G     L     T    GPT A+  YS 
Sbjct: 549 PAVTGVMLWTALHPNGCYQMCLTDWNLNNLPVGDVVDRLLQEWQTGQAAGPTDAHGAYSF 608

Query: 449 EAKFNDY--HFDYTSSQSSFVLDFSPPEQ 529
                +Y     Y +S S      SP ++
Sbjct: 609 SGFLGEYIVSVTYANSTSQATFSLSPGDE 637


>01_01_1015 + 8029884-8030676,8030755-8030771
          Length = 269

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 336 IVYCPSCLIILRIGCVAAGCLQHDGEDGHRARHFGGM 226
           +V CPS       GC   GC        HR RH GG+
Sbjct: 5   VVPCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGV 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,816
Number of Sequences: 37544
Number of extensions: 329754
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)