Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F16
         (866 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    27   0.25 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   7.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   7.2  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 399 WQDA-IFIVRNKSKIRFLDVIVFYVF*TQRLT 307
           W  A IF+V +K+ I F  +IVF +F  Q LT
Sbjct: 120 WTPAVIFVVLSKNGIVFAGLIVFILFFAQGLT 151


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 536  NLNAKNVCVMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRV 664
            +L +K +  MT   + S  P+K V D     GIN +  D+  V
Sbjct: 1322 DLCSKPIDEMTVDELRSRDPIKIVADLQKLKGINNEYEDQTEV 1364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 536  NLNAKNVCVMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRV 664
            +L +K +  MT   + S  P+K V D     GIN +  D+  V
Sbjct: 1322 DLCSKPIDEMTVDELRSRDPIKIVADLQKLKGINNEYEDQTEV 1364


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 370 IANDKYCILPMSCARLQRK 426
           I    YC LP SCA   R+
Sbjct: 477 IKGQPYCSLPNSCALTTRE 495


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 370 IANDKYCILPMSCARLQRK 426
           I    YC LP SCA   R+
Sbjct: 484 IKGQPYCSLPNSCALTTRE 502


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,973
Number of Sequences: 336
Number of extensions: 3394
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)