Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F16
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...   110   1e-24
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    30   2.5  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    29   5.7  

>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score =  110 bits (264), Expect = 1e-24
 Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 5/154 (3%)
 Frame = +2

Query: 392 SCQCPAHGYRGN----IQVSNATPLKDYAFEIKCSTVRYGLGVTREVGQDLVNLNAKNVC 559
           SC CP H    N     ++       DYAFE+ CST+R+G GVT E+G D+ NL AK   
Sbjct: 16  SC-CPHHAPATNPFKLAKLHGNNKSTDYAFEMVCSTLRFGKGVTLEIGYDVRNLGAKKTL 74

Query: 560 VMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDSSFKDAIHFAKEGNFDSFVAI 739
           ++TD NV +    K    +L    I Y+V+D V +EPT +S + AI FAK   FDSF+A+
Sbjct: 75  LITDKNVQNTIAFKNAEQALKMVNIEYEVFDDVLIEPTVNSMQKAIAFAKSKQFDSFIAV 134

Query: 740 XGGSVMDXVKLXXV-L**P*C*VLDYVNAPVGKA 838
            GGSV+D  K   +    P    LD+V  P GK+
Sbjct: 135 GGGSVIDTTKAAALYASNPEADFLDFVGPPFGKS 168


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 636 FIPFLVSESRTAFIGLKDATLGSVMT-QTFLAFKFTKSWPTSRVTPNPYRTVEHLI 472
           F P LV+ S   F    D T  S +T  T      T++ PTS VTP  Y TV+ ++
Sbjct: 523 FSPPLVTSSENPFTFTLDTTPTSTVTPMTSPPSTVTETTPTSTVTPRRY-TVDEIV 577


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +2

Query: 539 LNAKNVCVMTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDSSFKDAIHFAKEGN 718
           LN  N+  + D +   +SP+      L R+GI  ++   +  +  D   +D +++     
Sbjct: 64  LNVGNMANVPDEHTPMMSPVNTTTKILQRSGIKMEIPPYLDPDSQDDDPEDGVNYPDPDL 123

Query: 719 FDS 727
           FD+
Sbjct: 124 FDT 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,705
Number of Sequences: 27780
Number of extensions: 308161
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)