Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F14
         (870 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.8  
UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein...    35   3.1  
UniRef50_Q1MXI9 Cluster: TriK protein; n=1; Oceanobacter sp. RED...    34   5.4  

>UniRef50_Q0I6R0 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. CC9311|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain CC9311)
          Length = 391

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 467 TYSQNFEFGGYIDQVERTYEALRGVDPRLDRRMPFSMFQHSMCTVLNAY-IIDLTLDNGE 643
           T S       Y++Q+  ++  L+ +DP+L       +F H+ CT    + ++D    NG 
Sbjct: 38  TQSYAHHLKAYLNQLSDSF--LKNIDPQLSELYKLHLFDHTRCTHFARFVVVDQLFYNGR 95

Query: 644 RKMDS 658
           R+ DS
Sbjct: 96  RRNDS 100


>UniRef50_Q0P966 Cluster: Bipartate energy taxis response protein
           cetA precursor; n=12; Campylobacter|Rep: Bipartate
           energy taxis response protein cetA precursor -
           Campylobacter jejuni
          Length = 459

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +2

Query: 602 LNAYIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEI 763
           L+  ++DL+L  G +  D ++    L +D+ + +N+Y  + +I +T T NG E+
Sbjct: 154 LSRTLMDLSL--GNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEV 205


>UniRef50_Q1MXI9 Cluster: TriK protein; n=1; Oceanobacter sp.
           RED65|Rep: TriK protein - Oceanobacter sp. RED65
          Length = 671

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +2

Query: 428 TWDPILARSLFQETYSQNFEFGGYIDQVERTYEALRGVDPRLDRRMPFSMFQHSMCTVLN 607
           TW     + +    Y +    GG IDQ  R  + +  +DP+ D+ +P+ M+  + C  + 
Sbjct: 195 TWYETNMQVVGPTRYGKGVILGGLIDQAIRRNDTVFYIDPKEDKFLPYIMY--NACKEMG 252

Query: 608 AYIIDLTLDNGE 643
              + ++L +GE
Sbjct: 253 RKFVYVSLKDGE 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,064,618
Number of Sequences: 1657284
Number of extensions: 15352751
Number of successful extensions: 40882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40874
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)