Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   6.1  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   8.0  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 190 RNDRRAYEFQQRQ----ALRDDWNQVRDFEQREQKPRGPTQRSTNWRKQ 324
           R+ RR  + Q+R       RD + + R+   RE+ PR P +   NW+ +
Sbjct: 44  RSSRRYEDSQRRDYSPARRRDRYERHRE-SVREESPRRPVEHERNWQPE 91


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 632 DNGERKMDSARCQDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFNLPD 781
           DN E + D         ++L  P +  ++    G TT VNG +   N+ D
Sbjct: 419 DNSESEEDEHGMTIGFSKELKAPPDPQYFTEKTGATTYVNGNDESLNVSD 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,786
Number of Sequences: 5004
Number of extensions: 62664
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)