Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F14
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0044 - 21819193-21819418,21819531-21820759 31 0.91
12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792... 29 3.7
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219 29 4.8
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 29 4.8
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 4.8
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732... 29 6.4
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 6.4
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 29 6.4
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 362 MPLLLTILERRRKRPQLMNRSTTWDPILARS 454
MPL L +L+R++++ QL+ R T WD L S
Sbjct: 112 MPLSLRMLKRKKQQQQLVARQTRWDERLLGS 142
>12_01_0846 -
7920960-7921112,7921247-7921373,7921455-7921585,
7921992-7922033,7922126-7922167,7922416-7922508,
7922590-7922685,7923281-7923448,7923519-7923594,
7923687-7923766,7923855-7923950,7924023-7924392,
7925356-7925431,7925559-7925649
Length = 546
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 686 DLCLPENLYHYITSIGNTTTVNGEEIKFNLPDAAILKLL 802
DL LPE++ H IT + N + + EI F ILK L
Sbjct: 386 DLNLPEDITHQITCLANPSLFSCNEIHFGCCTMDILKHL 424
>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
Length = 215
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 611 YIIDLTLDNGERKMDSARCQDLLPEDLCLPENLYHYITSIGN 736
++IDL ++ + SAR ++LL ++ C E +H IGN
Sbjct: 80 HLIDL-VETKDNSPSSARLEELLRKENCRKETAFHDAVCIGN 120
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 392 RRKRPQLMNRSTTWDPILARSLFQETYSQNFEFGGYIDQVERTYEALRGVDPRLDRR 562
RR P+L + ILA L YS+ F G + + + Y + +D +LD+R
Sbjct: 321 RRCHPELYEQDKDVIGILANVLRSNPYSEQFRSLGQAEDL-KNYRVMLNLDQKLDQR 376
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 289 REVSVLFVQSHELGSSRHGELVSAGT--RRHGDRSCCLASHHQRDCHAVVVDXFQ 131
+E S++F Q+ G G+ + A R+ + CC+ASH + + +D Q
Sbjct: 624 KEFSLIFSQAPNRGGKAPGDSLDAQRWWNRYVEAQCCIASHDYKGGLDIYLDLMQ 678
>09_02_0330 +
7321031-7321231,7321313-7321434,7321461-7322135,
7322218-7322287,7322469-7322768
Length = 455
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -3
Query: 607 IKNSTHRMLEHT-EGHTPIQSWVHAPKSL-IGALHLINIATKLKVLRVSFLKQGSS*YGV 434
+ N+ +M E + GH Q ++ +P + IG L ++ +++ L LK S Y +
Sbjct: 279 LSNAKRKMRESSIVGHHDHQPFLSSPAYITIGFDDLFDLF-RIRKLDTGLLKCYSLLYWI 337
Query: 433 PSRRAVHQLGPFPPSL*NRK 374
SRR +Q+G PS+ N +
Sbjct: 338 ESRRLSNQVGFLDPSMVNER 357
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 150 LWLTX-SKALGLGIIICHPGCN 88
LWL S ++G G IICH GC+
Sbjct: 336 LWLVQNSNSIGQGYIICHLGCH 357
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 440 ILARSLFQETYSQNFEFGGYIDQVERTYEALRGVDP 547
ILA +FQ SQ FE + D E Y ALR V+P
Sbjct: 302 ILAGDIFQVVLSQRFERRTFADPFE-VYRALRIVNP 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,329
Number of Sequences: 37544
Number of extensions: 431338
Number of successful extensions: 1152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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