Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F12
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = -3

Query: 452 GXKKPXXXP--IXPKKXXFXPPXPXGGXPXPPXXFFXXGAP 336
           G   P   P  + P    F PP P G  P PP  F   G P
Sbjct: 277 GPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMP 317


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = -3

Query: 452 GXKKPXXXP--IXPKKXXFXPPXPXGGXPXPPXXFFXXGAP 336
           G   P   P  + P    F PP P G  P PP  F   G P
Sbjct: 277 GPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMP 317


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -3

Query: 461 PXRGXKKPXXXPIXPKKXXFXPPXPXGGXPXPPXXFFXXGAP 336
           P +   KP      P    F PP P  G   PP   F  G P
Sbjct: 54  PGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIP 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,087,958
Number of Sequences: 27780
Number of extensions: 98545
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)