Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F10
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.31
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 31 0.96
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 31 0.96
08_02_1129 - 24513568-24514296,24515380-24515817 30 2.2
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 30 2.9
05_03_0515 + 14930736-14932697 30 2.9
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 3.9
04_04_0347 + 24564589-24565296 29 3.9
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 6.8
11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488... 28 9.0
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 9.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.0
01_06_0570 - 30317848-30318240 28 9.0
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.31
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 286 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 384
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 31.5 bits (68), Expect = 0.96
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 623 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSS 736
A C TS+ R+ RRPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 31.5 bits (68), Expect = 0.96
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -2
Query: 746 WXGKNSASSLMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVG 579
W S ++ + TA + +FW V +S+ LL ++ S+ + + FVG
Sbjct: 1244 WTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVG 1299
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 667 SSGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 545
+S +SP QR A CSRW PS L + + A+QL C
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 545 ARGQLQSPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMR 676
A G+ P P V SS PR C LTS +R+P P R
Sbjct: 5 AVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASPRR 48
>05_03_0515 + 14930736-14932697
Length = 653
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 85 IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 261
+ L +C + V +P + +W YH + YV +S+ ++ S WSN + L
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367
Query: 262 DMMKE 276
+
Sbjct: 368 SCFSD 372
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 298 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 456
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 82 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 183
M L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 193 VRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQIS 342
+++++L+ LA+E+Q D ++ EL K S + R+E + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347
>11_06_0296 +
22046649-22048202,22048524-22048703,22048811-22048860,
22049443-22049564,22051007-22051119,22051227-22051436,
22052152-22052265,22052529-22052658,22053010-22053143,
22053997-22054077,22054181-22054267
Length = 924
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 118 VSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPS 297
++ A +++ G++ W + S +DT SLW +L N +H + ++L S
Sbjct: 376 ITDAVRFFKGNNSWSFLICPLSSRCDGRKFVDTSSLWGHLCN--KHPEGHWRKLQSVLGS 433
Query: 298 IINEGRVEGD 327
++E GD
Sbjct: 434 KLSENTSVGD 443
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 602 RWSSPPRATCGTLTSAWRQPRRPMR 676
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 529 KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNVRD 636
+QP SKRP AE T TT + ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
>01_06_0570 - 30317848-30318240
Length = 130
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 475 GSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFT---TESNVRDVDV 645
G +YE DVL +P Q P D P A T T PT R + + T + ++ R VD+
Sbjct: 5 GEELYESDVL---WPDHQS-PHDVVPPTATATATAPTPARRGQQQITRHCSTASSRPVDI 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,294,500
Number of Sequences: 37544
Number of extensions: 476170
Number of successful extensions: 1547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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