Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F09
(882 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 100 4e-20
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 80 8e-14
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 75 2e-12
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 57 7e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 54 6e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.34
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 36 1.0
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 1.4
UniRef50_Q8DKB0 Cluster: Tlr0949 protein; n=1; Synechococcus elo... 33 7.3
UniRef50_A1HFZ4 Cluster: Pili assembly chaperone precursor; n=3;... 33 7.3
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 33 9.6
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 100 bits (240), Expect = 4e-20
Identities = 59/100 (59%), Positives = 64/100 (64%)
Frame = +2
Query: 461 VCVLGALPLPRSLTRCARSFGCGXRYQLTQRR*YGYPXNQGITQERTCEQKASKRPGTVK 640
+C G +PLPRSLTR ARSFGCG RY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77
Query: 641 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 760
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFP
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFP 117
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 79.8 bits (188), Expect = 8e-14
Identities = 39/48 (81%), Positives = 40/48 (83%)
Frame = +2
Query: 617 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 760
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 49
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 74.9 bits (176), Expect = 2e-12
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +2
Query: 635 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP 760
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFP
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFP 85
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -3
Query: 625 PFAGLLLTCSFLRYPLIXWITVLPPLSELIPLAAAERP 512
P LLTCSF YPLI WITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 56.8 bits (131), Expect = 7e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 514 VVRLRXAVSAHSKAVIRLSTXSGDNAGKNM 603
VVRLR AVSAHSKAVIRLST SGDNAGKNM
Sbjct: 30 VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 53.6 bits (123), Expect = 6e-06
Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 425 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGXRYQL-TQRR*YGYPXNQGITQ 592
CI + A AR AV VL ALPL RS TRC RS GCG + R YG P QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 43.2 bits (97), Expect = 0.009
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = +2
Query: 482 PLPRSLTRCARSFGCGXRYQLTQRR*YGYPXNQGITQERTCEQKASKRPGTVKRPRCWRF 661
PLP C C L + +P N I +R + + + P T F
Sbjct: 14 PLPNKTRYCCHRQQC----LLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLF 69
Query: 662 SIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP---PXSSLXAP 784
S PLT+ITKI Q + +T+ +YK T FP P SL P
Sbjct: 70 PYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFP 113
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.34
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -1
Query: 495 ERGSGRAPNTQTAXPRALADSLMQ 424
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 36.3 bits (80), Expect = 1.0
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 228 DPXMIXYIDXFGQTTTKMQ 284
DP MI YID FGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 423 SALMNRPTXGXRRFAYW 473
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_Q8DKB0 Cluster: Tlr0949 protein; n=1; Synechococcus
elongatus|Rep: Tlr0949 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 372
Score = 33.5 bits (73), Expect = 7.3
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 748 QAFPPXKLPRCAXXVXXPCRFTGIPVPPFSFGTWASIPXXS 870
Q P +LP A P FTGI PP SF A +P S
Sbjct: 78 QPLLPTELPPLATTTPPPLPFTGIEPPPLSFAPLAPLPPLS 118
>UniRef50_A1HFZ4 Cluster: Pili assembly chaperone precursor; n=3;
Ralstonia pickettii|Rep: Pili assembly chaperone
precursor - Ralstonia pickettii 12J
Length = 247
Score = 33.5 bits (73), Expect = 7.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 665 IGSAPLTSITKIDAQVRGGETRQDYKDTRRFPPXSSLXAPXXXPXPAXLPE 817
+ + L +T +DA+V GG + D + P S++ P P A PE
Sbjct: 165 LSNPSLYHVTVVDAKVHGGSAEESVIDAKMVAPNSTVTLPVKLPTNAAAPE 215
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.1 bits (72), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 634 GSWPFAGLLLTCSFLRYP---LIXWITVLPPLSELIPLAAAERP 512
G W +G L L++ LI W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,336,901
Number of Sequences: 1657284
Number of extensions: 10943519
Number of successful extensions: 24592
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24588
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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