Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F06
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 31 1.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.5
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 30 2.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.5
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 30 2.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.7
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/100 (29%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Frame = -1
Query: 685 GXGXXLFXGGGGXXXGGXXXXXGXGXXFFFKXXXXRXXGGXX-----FXXFXXPXGGGGG 521
G F GGGG GG G G F GG GGGGG
Sbjct: 45 GLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGG 104
Query: 520 FFXKXFXXGGGGGPXXFXXXFFXXPPXFXGXFFXXGGGGG 401
+ GGGG F G GGGGG
Sbjct: 105 NYGGGGGNQGGGGGGGFNFN------DIGGLINSMGGGGG 138
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 526 GGFFXKXFXXGGGGGPXXFXXXFFXXPPXFXGXFFXXGGGGG 401
GG F GGGGG F F G GGGGG
Sbjct: 44 GGLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGG 85
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/109 (25%), Positives = 31/109 (28%)
Frame = -1
Query: 730 GGXXXXXXXXXGXXXGXGXXLFXGGGGXXXGGXXXXXGXGXXFFFKXXXXRXXGGXXFXX 551
GG G G GGGG GG G G GG
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGG 194
Query: 550 FXXPXGGGGGFFXKXFXXGGGGGPXXFXXXFFXXPPXFXGXFFXXGGGG 404
GGGG+ GG GG + P G + GGGG
Sbjct: 195 ---GSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGG 240
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/109 (25%), Positives = 31/109 (28%)
Frame = -1
Query: 730 GGXXXXXXXXXGXXXGXGXXLFXGGGGXXXGGXXXXXGXGXXFFFKXXXXRXXGGXXFXX 551
GG G G GGGG GG G G GG
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGG 194
Query: 550 FXXPXGGGGGFFXKXFXXGGGGGPXXFXXXFFXXPPXFXGXFFXXGGGG 404
GGGG+ GG GG + P G + GGGG
Sbjct: 195 ---GSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGG 240
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/103 (23%), Positives = 24/103 (23%), Gaps = 4/103 (3%)
Frame = +2
Query: 485 PPPPXXKXFXKKTXXXXXXXXKXXKXXPPXXPGXXXFKKKXXXPPXXXXXPPPXGPPPPX 664
PPP T PP PG PP PP G PPP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 665 K*XXXXPXXXXXPXXXXXXXA----PQXNQKKXXXXGGXPPXP 781
P P P GG PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/103 (23%), Positives = 24/103 (23%), Gaps = 4/103 (3%)
Frame = +2
Query: 485 PPPPXXKXFXKKTXXXXXXXXKXXKXXPPXXPGXXXFKKKXXXPPXXXXXPPPXGPPPPX 664
PPP T PP PG PP PP G PPP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 665 K*XXXXPXXXXXPXXXXXXXA----PQXNQKKXXXXGGXPPXP 781
P P P GG PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/83 (32%), Positives = 28/83 (33%)
Frame = -1
Query: 730 GGXXXXXXXXXGXXXGXGXXLFXGGGGXXXGGXXXXXGXGXXFFFKXXXXRXXGGXXFXX 551
GG G G G F GGGG GG G G F GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGGGGFN---FNDIGG----- 103
Query: 550 FXXPXGGGGGFFXKXFXXGGGGG 482
GGGGG + GGGGG
Sbjct: 104 LINSMGGGGGGGQR--QGGGGGG 124
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/103 (23%), Positives = 24/103 (23%), Gaps = 4/103 (3%)
Frame = +2
Query: 485 PPPPXXKXFXKKTXXXXXXXXKXXKXXPPXXPGXXXFKKKXXXPPXXXXXPPPXGPPPPX 664
PPP T PP PG PP PP G PPP
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
Query: 665 K*XXXXPXXXXXPXXXXXXXA----PQXNQKKXXXXGGXPPXP 781
P P P GG PP P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Frame = -1
Query: 667 FXGGGGXXXGGXXXXXGXGXXFFFKXXXXRXXGGXXFXXFXXPXGGGGGFFXKXFXXGG- 491
+ G GG GG G G + GG + GG GG + GG
Sbjct: 79 YGGSGGGAFGGFNGGYGQGG-YGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGY 137
Query: 490 ---GGGPXXFXXXFFXXPPXFXGXFFXXGGGG 404
GGGP + + G F GGGG
Sbjct: 138 GGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGG 169
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/72 (27%), Positives = 23/72 (31%)
Frame = +2
Query: 566 PPXXPGXXXFKKKXXXPPXXXXXPPPXGPPPPXK*XXXXPXXXXXPXXXXXXXAPQXNQK 745
PP P + PP PPP PPPP P P P ++
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPP--PPPPPGRTPGPPGMPGMP------PPPPPSRF 325
Query: 746 KXXXXGGXPPXP 781
GG PP P
Sbjct: 326 GPPGMGGMPPPP 337
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/72 (27%), Positives = 23/72 (31%)
Frame = +2
Query: 566 PPXXPGXXXFKKKXXXPPXXXXXPPPXGPPPPXK*XXXXPXXXXXPXXXXXXXAPQXNQK 745
PP P + PP PPP PPPP P P P ++
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPP--PPPPPGRTPGPPGMPGMP------PPPPPSRF 335
Query: 746 KXXXXGGXPPXP 781
GG PP P
Sbjct: 336 GPPGMGGMPPPP 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,110
Number of Sequences: 27780
Number of extensions: 180740
Number of successful extensions: 1364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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