Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F04
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   4.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 401 SMLVFSHSFSSNV*RATWVALSTISRAYGSARF 303
           +M+    SF  N     W+ LS+  RAY S  F
Sbjct: 481 AMMALRTSFLVNDFGFIWLVLSSTVRAYASRAF 513


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 27  GILKILIVHPDYVCILVLIF-LYSRIPSFCVRIVYL 131
           GIL + +++  Y   L+LIF   S  P   V +VY+
Sbjct: 236 GILFVGVIYTTYTIFLLLIFGSGSATPENNVSVVYV 271


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 378 VLFKCVKGNVGSTIDNFTS 322
           V+F C +G+V    DNF++
Sbjct: 73  VIFYCQEGSVDFLFDNFSA 91


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 378 VLFKCVKGNVGSTIDNFTS 322
           V+F C +G+V    DNF++
Sbjct: 306 VIFYCQEGSVDFLFDNFSA 324


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 378 VLFKCVKGNVGSTIDNFTS 322
           V+F C +G+V    DNF++
Sbjct: 306 VIFYCQEGSVDFLFDNFSA 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,709
Number of Sequences: 336
Number of extensions: 3863
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)