Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F04
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    73   4e-13

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
 Frame = +1

Query: 277 LRSMNFAALKRADPYAREIVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSL 450
           L + N A L++ D  A +I+D     A+Y  +    EW ++N EG  FVY R   PY S 
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFVYQRADRPYFSF 71

Query: 451 VIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVK 630
           +I NR + ++ IEP++    L+    F+ +      I  +WF+  D+    A K+  L++
Sbjct: 72  LIANRNDPSDFIEPLTLNHILRHDGNFIYFYKDLASIQALWFHQIDD----AQKIYNLLQ 127

Query: 631 ESIKQSQGETMPQNSVYNSSTTSTQS 708
           + + + +G T  Q     +++ + Q+
Sbjct: 128 KLVNRLKGSTTEQARAAKAASEAPQA 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,196
Number of Sequences: 27780
Number of extensions: 335090
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)