Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F03
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     33   0.23 
12_02_0682 - 21923334-21923626,21923684-21923733,21923982-219240...    31   1.6  
02_01_0382 - 2772378-2773544                                           29   5.0  

>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 203 WALSSAKHHXRFSTEATKPAPVXHRVCSLCISCIPIWPPNRSSSVGRXWSLVVARVSAIR 382
           WA+    HH   +  A   AP  H V  L      +    R++S GR W +  A      
Sbjct: 383 WAVDDDDHHHHHAL-AEYSAPEDHMVAELA----RLMSELRAASRGRAWLVAAASYQTYV 437

Query: 383 RCQRMKQVRQSSAEPMQSSW 442
           RCQ+ +  R+  A  ++++W
Sbjct: 438 RCQQRR--RRRRAPSLEATW 455


>12_02_0682 -
           21923334-21923626,21923684-21923733,21923982-21924041,
           21924081-21924235
          Length = 185

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +3

Query: 294 SVAYRSGLQIG--AHQSAEXGRWWWQECRRFGGVSV*SK*DRVRLNQCSHRGKTHRTFYI 467
           SV  R+   IG     S+  G WWW    R G ++  S+  R  L+         R    
Sbjct: 23  SVVKRATAWIGRRGQMSSVEGPWWWSPMARLGNLAARSR--RHWLDSGLGGWAGPRPMQT 80

Query: 468 RSSHGGYTHTSPRHRRFDI 524
           R S GG+     R RR ++
Sbjct: 81  RQSPGGHDEEETRERREEL 99


>02_01_0382 - 2772378-2773544
          Length = 388

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
 Frame = +2

Query: 191 PTGPWALSSA--KHHXR-----FSTEATKPAPVXHRVCSLCISCIPI 310
           PT P + S+A  +HH +      ST AT PAP  H + SL ISC+ I
Sbjct: 29  PTSPPSSSNASRRHHQQPPRASASTPAT-PAPSRHHLRSLSISCMTI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,977,790
Number of Sequences: 37544
Number of extensions: 340618
Number of successful extensions: 1047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)