Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F03
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    29   5.9  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 405 TCFIR*HRRIADTLATTNDHXLPTDELLF 319
           T FIR H RIAD L + N H   TD+ L+
Sbjct: 386 TVFIRHHNRIADNLRSINRHW--TDDKLY 412


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 405 TCFIR*HRRIADTLATTNDHXLPTDELLF 319
           T FIR H RIAD L + N H   TD+ L+
Sbjct: 386 TVFIRHHNRIADNLRSINRHW--TDDKLY 412


>U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical
           protein B0310.4 protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 432 SHRGKTHRTFYIR-SSHGGYTHTSPRHR 512
           +HRGKTHR    R  +H G TH    HR
Sbjct: 30  THRGKTHRGETHRGETHRGETHRGETHR 57



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 432 SHRGKTHRTFYIR-SSHGGYTHTSPRHR 512
           SHRG+THR    R  +H G TH    HR
Sbjct: 10  SHRGETHRGETHRGETHRGETHRGKTHR 37


>AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical
           protein W04B5.3c protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +3

Query: 96  PTPPTVSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQSIXTDFPL--KPQNQPP 266
           P PP+    S   +PT SV      P S    P +P   PQQ      P+    Q  PP
Sbjct: 279 PQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQAPIYQNQQQMPP 337


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +3

Query: 96  PTPPTVSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQSIXTDFPL--KPQNQPP 266
           P PP+    S   +PT SV      P S    P +P   PQQ      P+    Q  PP
Sbjct: 279 PQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQAPIYQNQQQMPP 337


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +3

Query: 96  PTPPTVSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQSIXTDFPL--KPQNQPP 266
           P PP+    S   +PT SV      P S    P +P   PQQ      P+    Q  PP
Sbjct: 279 PQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQAPIYQNQQQMPP 337


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 57  KVRTLXXVCLSSGPTPPTVSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQSIXTD 236
           +V+++     SS    P  S P+  +SP       FV P  +   P+V    PQQ +   
Sbjct: 288 RVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRT--FVRPNEQFQQPRVVRPQPQQQLTRP 345

Query: 237 FPLKPQNQPP 266
            P +PQ + P
Sbjct: 346 APARPQTRRP 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,174
Number of Sequences: 27780
Number of extensions: 262524
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)