Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F01
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 36 0.008
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 36 0.010
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 30 0.38
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 28 2.0
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 3.6
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 6.2
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 8.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 8.2
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.2
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 35.9 bits (79), Expect = 0.008
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +1
Query: 301 INYVVSTHGHSDHVGNNNLFLN---AKHIVGFSISFREKYFMHPFDKGEEYKIND-SVKV 468
+ Y+++TH H DH G N L+ + + G + Y P DK E +K+ + V+
Sbjct: 56 LQYILTTHHHYDHAGGNEDILSYFPSLKVYGGKNASGVTY--TPKDK-EIFKVGEVQVEA 112
Query: 469 IPTPGHTQSDVTVIATTRRGEAIAITGD 552
+ TP HTQ + ++ A+ TGD
Sbjct: 113 LHTPCHTQDSICYYVSSPSKRAV-FTGD 139
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 35.5 bits (78), Expect = 0.010
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 310 VVSTHGHSDHVGNN-NLFLNAKHIVGFSISFREKYFMHPFDKGEEYKI-NDSVKVIPTPG 483
+++TH H+DH G N NL H+ + S + H E +I N ++ + TP
Sbjct: 59 ILTTHHHADHSGGNLNLKKEFPHVTIYGGS-DQNGVSHVLQDKETLRIGNVQIEALHTPC 117
Query: 484 HTQSDVTVIATTRRGEAIAITGD 552
HT+ + A + A+ TGD
Sbjct: 118 HTRDSICFYAHSSNEHAV-FTGD 139
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 30.3 bits (65), Expect = 0.38
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = -3
Query: 440 SSPLSKGCIKYFSLNDILNPTICFAFKKRLLFPTWSECPCVDTT*FIASGIIWFCCRAFF 261
+SPL K + + S+ + P +C+ K LF + + V + AS ++ F +F
Sbjct: 98 TSPLKKAFLSFISIFVLNVPAVCYLTYKDALFKDYGKDEWVYFAVWCASCLMIFISLWYF 157
Query: 260 ILSASQAVMVSTIIL 216
+ +AV V+ I L
Sbjct: 158 YETWIKAVKVTVIFL 172
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 376 IVGFSISFREKYFMHPFDKGEEYKINDSVKVIPTPGHTQSDVTVIAT 516
I GF +R+ Y PF+ E Y I DS +IP P + ++ T
Sbjct: 157 ITGFEEPWRKTYASIPFNTLEYYNI-DSWALIPNPFSPDLGMDIVVT 202
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = -3
Query: 440 SSPLSKGCIKYFSLNDILNPTICFAFKKRLLFPTWSECPCVDTT*FIASGIIWFCCRAFF 261
+SPL K + + S+ + P +C+ K LF + + V + A ++ F +F
Sbjct: 98 TSPLKKAFLSFISIFVLNVPAVCYLTYKDALFKDYGKDEWVYFGVWCAICLMIFISLWYF 157
Query: 260 ILSASQAVMVSTIIL 216
+ +AV V+ I L
Sbjct: 158 YETWIKAVKVTVIFL 172
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/82 (19%), Positives = 30/82 (36%)
Frame = +1
Query: 280 NQMIPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSISFREKYFMHPFDKGEEYKINDS 459
N++I A + +S + DH+ + + + G + K + K EY D
Sbjct: 335 NRLIKSAAKWSISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDL 394
Query: 460 VKVIPTPGHTQSDVTVIATTRR 525
P + ++ A RR
Sbjct: 395 ENYFKLPSEYNNGISFAAKGRR 416
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 551 SPVIAIASPLLVVAITVTSDCVCPGV 474
SP + ++S L A ++ S+C CP V
Sbjct: 297 SPCLTVSSGPLSTASSIPSNCSCPSV 322
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 421 PFDKGEEYKINDSVK----VIPTPGHTQSDVTVIATT 519
P D+ ++Y IN S+ V PTP H+ SD +A T
Sbjct: 105 PSDRQQDY-INPSLHLNRTVFPTPQHSISDANFLANT 140
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 271 LQQNQMIPEAINYVV-STHGHSDHVGNNNLFLNAK 372
+Q N P+ +V S+ GH+D+ GN++L L++K
Sbjct: 393 VQSNSRQPKVGFHVNNSSSGHNDNEGNHSLILSSK 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,705
Number of Sequences: 5004
Number of extensions: 68754
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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