Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F01
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0738 - 19828852-19828892,19830033-19830156,19830515-198307... 37 0.025
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686... 33 0.40
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 32 0.53
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 31 1.2
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799... 31 1.6
12_01_1105 + 11672118-11673245 30 2.8
07_03_1642 - 28319790-28321445 29 3.8
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 29 6.6
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 28 8.7
05_05_0224 - 23427375-23427543,23428152-23428384 28 8.7
01_07_0247 - 42257692-42257853,42258149-42258296,42258653-422587... 28 8.7
01_01_0354 + 2804640-2804703,2804911-2806451 28 8.7
>09_04_0738 -
19828852-19828892,19830033-19830156,19830515-19830718,
19831505-19831690,19832098-19832172
Length = 209
Score = 36.7 bits (81), Expect = 0.025
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +1
Query: 247 DADKIKNALQQNQMIPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSISFREKYFMHPF 426
+A I NAL++ + + Y+++TH H DH G NL L AK+ S +++ +
Sbjct: 114 EATPIINALEKRN---QNLTYILNTHHHYDHTG-GNLELKAKYGAKVIGSAKDRDRIPGI 169
Query: 427 D----KGEEYKI-NDSVKVIPTPGHTQSDV 501
D +G+ + V V+ TPGHT SDV
Sbjct: 170 DITLSEGDTWMFAGHQVLVMETPGHT-SDV 198
>01_06_0183 -
27268190-27268281,27268454-27268478,27268568-27268621,
27268688-27268747,27269166-27269300,27270106-27270213,
27270330-27270458,27270845-27270905,27271081-27271112,
27271161-27271289
Length = 274
Score = 32.7 bits (71), Expect = 0.40
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +1
Query: 307 YVVSTHGHSDHVGNNNLFL----NAKHIVGFSISFREKYFMHPFDKGEEYKINDSVKVIP 474
Y ++TH H+DHV L K ++ + +F+ DK Y N ++V
Sbjct: 99 YAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKAKADHFIEHGDK--IYFGNLFLEVRS 156
Query: 475 TPGHTQSDVTVI---ATTRRGEAIAITGD 552
TPGHT VT + + +A TGD
Sbjct: 157 TPGHTAGCVTYVTGEGDDQPSPRMAFTGD 185
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 32.3 bits (70), Expect = 0.53
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +1
Query: 301 INYVVSTHGHSDHVGNNNLFLNAK---HIVGFSISFREKYFMHPFDKGEEYKINDSVKV- 468
I+ V++TH H DH G N + + G S+ K + G + + +++
Sbjct: 58 IDCVLTTHHHWDHAGGNEKMAQSVPGIKVYGGSLD-NVKGCTDQVENGTKLSLGKDIEIL 116
Query: 469 -IPTPGHTQSDVTVIATTRRGEAIAI-TGD 552
+ TP HT+ ++ T++ E A+ TGD
Sbjct: 117 CLHTPCHTKGHISYYVTSKEEEDPAVFTGD 146
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 442 YKINDSVKVIPTPGHTQSDVTVIATTRRGEAIAITGDLFERREDIENPSIWLEAGSEDPV 621
+ I ++I TPGHTQ V + + TGD + E+ ++ ++L +
Sbjct: 217 WNIGADFELIHTPGHTQGSVCLFYKPVKA---LFTGDHVAKSEESDDLYLFLMYSRQPVS 273
Query: 622 QQMKNRSKVAD-SASWIVPGSWYXI 693
Q+ + K+ W +PG Y I
Sbjct: 274 LQLDSMRKLLKLDFEWFLPGHGYRI 298
>02_05_1316 -
35679456-35679538,35679660-35679722,35679824-35679938,
35680271-35680372,35680667-35680736,35681182-35681273,
35681542-35681622,35681697-35681740,35681829-35681976
Length = 265
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 442 YKINDSVKVIPTPGHTQSDVTVIATTRRGEAIAITGDLFERREDIENPSIWLEAGSEDPV 621
+ I ++I TPGHT+ V + + TGD + E+ ++ ++L +
Sbjct: 163 WDIGADFELIHTPGHTEGSVCLFYKPVKA---LFTGDHVAKSEESDDLDLFLMYSKQSVG 219
Query: 622 QQMKNRSKVAD-SASWIVPGSWYXI 693
Q+ + K+ W +PG Y I
Sbjct: 220 LQLDSMRKLLKLDFEWFLPGHGYRI 244
>12_01_1105 + 11672118-11673245
Length = 375
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 406 KYFMHPFDKGEEYKINDSVKVIPTPGHTQSDVTVIATTRRGEAI 537
+++ HP+ KG+ ++ + ++K+ P G T D+ T R + I
Sbjct: 37 EFYSHPYQKGDRWEYDMTIKINPPRGET--DMYYFRTRHRRDTI 78
>07_03_1642 - 28319790-28321445
Length = 551
Score = 29.5 bits (63), Expect = 3.8
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 247 DADKIKNALQQNQMIPEAINYVVSTHGH 330
+A++ KN +++ ++P+ +Y HGH
Sbjct: 441 EAERFKNEMEKKGLVPDIYSYAALVHGH 468
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 232 CQQ*YYAFLLSEYNCNWHLTDLFHSCLRTHQIKQ*FH 122
C Q LL+EYN D+ SCLR+ Q K H
Sbjct: 122 CHQVKGCLLLAEYNILCEAFDVVTSCLRSEQYKGVLH 158
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = -3
Query: 605 PASNQILGFSISSRLSNKSPVIAIASPLLVVAITVTSDCVCPGVGITFTLSLILYSSPLS 426
PA ++ +S+ +S P+ + + + D + P VG ++Y S
Sbjct: 175 PAPRELAPIVVSNHVSYIEPIYFFYELFPTIVSSDSHDSI-PFVGTIIRAMQVIYVDRFS 233
Query: 425 KGCIKYFSLNDILNPTICFAFKKRLLFP 342
K ++N+I C +F + LLFP
Sbjct: 234 PASRKS-AVNEIKRKAACNSFPRVLLFP 260
>05_05_0224 - 23427375-23427543,23428152-23428384
Length = 133
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 668 IQLAES-ATFDLFFICCTGSSLPASNQILGFSISSRLSNKSPVIAIASP 525
I LA S A FDLF ICC + AS + GF + +L + A+ P
Sbjct: 46 IYLAVSLAKFDLFSICCDPDTNVASTE--GFDLGRQLLVVQDIAAVLFP 92
>01_07_0247 -
42257692-42257853,42258149-42258296,42258653-42258735,
42258818-42258877,42259400-42259450,42259781-42259831,
42259899-42259927,42260009-42260080,42260176-42260249,
42260562-42260677
Length = 281
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 458 LSLILYSSPLSKGCIKYFSLNDILNPTICFAFKKRLLFPTWS 333
+ I SS LSKG + S L ++ +RLL P+WS
Sbjct: 174 IGYIARSSLLSKGVSSFVSFIGSLQASVTRGIMRRLLGPSWS 215
>01_01_0354 + 2804640-2804703,2804911-2806451
Length = 534
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 193 CTLIKGMHNIIVDTMTAWDADK----IKNALQQNQMIPEAINYVVSTHGHSDH 339
C L +N+I++ +WD +K + + +++N P+ ++ + HG H
Sbjct: 420 CRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSH 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,328,151
Number of Sequences: 37544
Number of extensions: 375402
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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