Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E24
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...   139   4e-34
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    31   0.22 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   8.2  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score =  139 bits (337), Expect = 4e-34
 Identities = 69/97 (71%), Positives = 77/97 (79%)
 Frame = +1

Query: 577 LQGAKVKADPEKVKAFXASLRKLGDVYINDAFGTAHRAHSSMVGEGFEQRASGFLLKKEL 756
           + G KVKAD   V+AF  SL  LGD+++NDAFGTAHRAHSSMVG     R SGFL+KKEL
Sbjct: 133 VDGKKVKADASAVEAFRKSLTSLGDIFVNDAFGTAHRAHSSMVGVDLP-RVSGFLMKKEL 191

Query: 757 QYFAKALHEPERPFLAILGGAKVADKILLIENLLDKV 867
            YF+KAL  P RPFLAILGGAKVADKI LI+NLLDKV
Sbjct: 192 DYFSKALENPARPFLAILGGAKVADKIQLIDNLLDKV 228



 Score =  129 bits (312), Expect = 4e-31
 Identities = 64/104 (61%), Positives = 78/104 (75%)
 Frame = +2

Query: 191 KLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLG 370
           KL+I  ++L GK VL+RVDFNVPL    ITNN RIV AL ++KYAL++  K+V+LMSHLG
Sbjct: 6   KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPKAVILMSHLG 65

Query: 371 RPDGQVNLKYTLKPVAEELKKLLNKDVTFLTDCIGLEVETACAD 502
           RP+G    KY+LKPVA EL KLL K V FL DC+G EVE AC +
Sbjct: 66  RPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKE 109



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 513 GSIILLENLRFHIEEEG 563
           G +ILLENLRFHIEEEG
Sbjct: 113 GEVILLENLRFHIEEEG 129


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +2

Query: 263 KEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLLN 442
           K  V       +AAL+  ++   KG K+VV++   G P G   +   LKP +  +   L 
Sbjct: 443 KARVFDAENDFIAALERGEFK--KGEKTVVIIRFEG-PKGGPGMPEMLKPSSAIMGAGLG 499

Query: 443 KDVTFLTD 466
           KDV  LTD
Sbjct: 500 KDVALLTD 507


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 687  SMCSTKSIINVDITKFSQACXKGFNFF 607
            S C T + +N  +T+  Q C +GF+ F
Sbjct: 959  SACPTLTPVNTVLTRQQQECFRGFSSF 985


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 79  ILSISLHRNLKISRKLPKTESFEE 150
           I + SLHR+   S K+ K  SF+E
Sbjct: 137 ITNFSLHRSFSASGKMEKNNSFKE 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,360
Number of Sequences: 5004
Number of extensions: 65361
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)