Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E24
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88169-9|AAB42230.1| 417|Caenorhabditis elegans Phosphoglycerat... 170 1e-42
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 3.3
Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical p... 28 7.7
U64603-4|AAO61442.1| 410|Caenorhabditis elegans Serotonin/octop... 28 7.7
U64603-3|AAM15552.1| 422|Caenorhabditis elegans Serotonin/octop... 28 7.7
U64603-2|AAB04582.3| 435|Caenorhabditis elegans Serotonin/octop... 28 7.7
AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical ... 28 7.7
>U88169-9|AAB42230.1| 417|Caenorhabditis elegans Phosphoglycerate
kinase protein 1 protein.
Length = 417
Score = 170 bits (413), Expect = 1e-42
Identities = 81/109 (74%), Positives = 93/109 (85%)
Frame = +2
Query: 182 ALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMS 361
+LNKL+ID LNL GKRVL+RVDFNVPLK+G ITNNQRI AA+ ++++AL GAKSVVLMS
Sbjct: 3 SLNKLAIDQLNLAGKRVLIRVDFNVPLKDGKITNNQRIAAAVPTIQHALSNGAKSVVLMS 62
Query: 362 HLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLTDCIGLEVETACADPS 508
HLGRPDG+ KYTLKPVAEELK LL KDV FL DC+G EVE ACADP+
Sbjct: 63 HLGRPDGRRQDKYTLKPVAEELKALLKKDVLFLDDCVGSEVEAACADPA 111
Score = 149 bits (362), Expect = 2e-36
Identities = 74/95 (77%), Positives = 78/95 (82%)
Frame = +1
Query: 583 GAKVKADPEKVKAFXASLRKLGDVYINDAFGTAHRAHSSMVGEGFEQRASGFLLKKELQY 762
GAKVKAD VK F SL KLGD+Y+NDAFGTAHRAHSSMVG QRASGFLLK EL Y
Sbjct: 136 GAKVKADSAAVKKFRESLTKLGDIYVNDAFGTAHRAHSSMVGVEHSQRASGFLLKNELSY 195
Query: 763 FAKALHEPERPFLAILGGAKVADKILLIENLLDKV 867
F+KAL P RPFLAILGGAKVADKI LI+NLLDKV
Sbjct: 196 FSKALDNPARPFLAILGGAKVADKIQLIKNLLDKV 230
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 513 GSIILLENLRFHIEEEGKGVDASG 584
GS+ILLENLR+H+EEEGKGVDASG
Sbjct: 113 GSVILLENLRYHLEEEGKGVDASG 136
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 422 ELKKLLNKDVTFLTDCIGLEVETACADPSXWFNYPTGESS 541
+LK + D F T C LEVE++C D + Y + E S
Sbjct: 2953 DLKPISTPDEHFATCCSLLEVESSCTDLCSYSTYSSEEVS 2992
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 422 ELKKLLNKDVTFLTDCIGLEVETACADPSXWFNYPTGESS 541
+LK + D F T C LEVE++C D + Y + E S
Sbjct: 2953 DLKPISTPDEHFATCCSLLEVESSCTDLCSYSTYSSEEVS 2992
>Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 338 AKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLL 439
AK +V HLG DG +L T + EEL+KLL
Sbjct: 396 AKRIVTYGHLG--DGNTHLNITSEKHNEELEKLL 427
>U64603-4|AAO61442.1| 410|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform c
protein.
Length = 410
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 384 WPSGLPKCDISTTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRIRTLLPVK--- 214
WP G C + TT L A + A ++ VI+ L + K T R ++ +
Sbjct: 107 WPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRYLVISSPLRYSAKRTTKRIMMYIACVW 166
Query: 213 LSASILNLFKAILSRKLN 160
+ A+I+++ I++ LN
Sbjct: 167 IIAAIVSISSHIIANLLN 184
>U64603-3|AAM15552.1| 422|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform b
protein.
Length = 422
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 384 WPSGLPKCDISTTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRIRTLLPVK--- 214
WP G C + TT L A + A ++ VI+ L + K T R ++ +
Sbjct: 107 WPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRYLVISSPLRYSAKRTTKRIMMYIACVW 166
Query: 213 LSASILNLFKAILSRKLN 160
+ A+I+++ I++ LN
Sbjct: 167 IIAAIVSISSHIIANLLN 184
>U64603-2|AAB04582.3| 435|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform a
protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 384 WPSGLPKCDISTTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRIRTLLPVK--- 214
WP G C + TT L A + A ++ VI+ L + K T R ++ +
Sbjct: 107 WPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRYLVISSPLRYSAKRTTKRIMMYIACVW 166
Query: 213 LSASILNLFKAILSRKLN 160
+ A+I+++ I++ LN
Sbjct: 167 IIAAIVSISSHIIANLLN 184
>AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 338 AKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLL 439
AK +V HLG DG +L T + EEL+KLL
Sbjct: 396 AKRIVTYGHLG--DGNTHLNITSEKHNEELEKLL 427
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,205,207
Number of Sequences: 27780
Number of extensions: 360115
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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