Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E22
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   165   6e-42
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   165   8e-42
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  165 bits (402), Expect = 6e-42
 Identities = 78/114 (68%), Positives = 91/114 (79%)
 Frame = +2

Query: 50  LSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 229
           ++SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AF
Sbjct: 60  ITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAF 119

Query: 230 GKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 391
           GKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG  + +  K+ GF
Sbjct: 120 GKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 491
           P +Q+I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  165 bits (401), Expect = 8e-42
 Identities = 78/114 (68%), Positives = 91/114 (79%)
 Frame = +2

Query: 50  LSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAF 229
           ++SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AF
Sbjct: 60  ITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAF 119

Query: 230 GKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 391
           GKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG  + +  K+ GF
Sbjct: 120 GKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 491
           P +Q+I VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 247  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 131
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,856
Number of Sequences: 5004
Number of extensions: 47995
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)