Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E22
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...   171   6e-43
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...   168   6e-42
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...   163   2e-40
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   1.7  
02_02_0317 + 8893593-8894207                                           31   1.7  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    28   8.9  
07_03_0604 + 19903654-19904598                                         28   8.9  

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score =  171 bits (416), Expect = 6e-43
 Identities = 80/117 (68%), Positives = 93/117 (79%)
 Frame = +2

Query: 47  SLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 226
           ++SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGA
Sbjct: 59  NVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA 118

Query: 227 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 397
           FGKPQGT ARV IGQ ++SVR  +       EALRRAKFKFPG  K +  ++ GF K
Sbjct: 119 FGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 491
           P RQKI  S+KWGFTK+ R+E+ KL+ EGR+ +DG   Q    HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score =  168 bits (408), Expect = 6e-42
 Identities = 78/117 (66%), Positives = 92/117 (78%)
 Frame = +2

Query: 47  SLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 226
           +++SEALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGA
Sbjct: 55  NVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA 114

Query: 227 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 397
           FGKPQGT ARV IGQ ++SVR          EALRRAKFKFPG  K +  ++ GF K
Sbjct: 115 FGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171



 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 455
           P RQKI  S+KWGFTK+ RDE+ +L+ EGR+  DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score =  163 bits (395), Expect = 2e-40
 Identities = 77/115 (66%), Positives = 90/115 (78%)
 Frame = +2

Query: 47  SLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 226
           ++SSEALEA RI CNKY+ K+ GKD FH+R+  HP+HV+RINKMLSCAGADRLQTGMRGA
Sbjct: 366 NVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGA 425

Query: 227 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 391
           FGKP GT ARVRIGQ ++SVR  D   A   EALRRAKFKFPG  + +   + GF
Sbjct: 426 FGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 485
           P RQ++  S KWGFT+++RDE+ KL+ EGR+  DG   +    HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 276  MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 184
            + CP+ + + VP  LP++P  P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 522 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 433
           G +P P++  R +HVP   GG  R  RHWR  P
Sbjct: 3   GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34


>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
            22300591-22300660,22301632-22301726,22301917-22302048,
            22302154-22302222,22302953-22303051,22303169-22303253,
            22303353-22303453,22303660-22303728,22303861-22303901,
            22304085-22304303,22304444-22304470,22304562-22304660,
            22304898-22305106,22305382-22305485,22305753-22305894,
            22305991-22306289,22306508-22306903
          Length = 1229

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 230  GKPQGTVARVRIGQPIMSVRSSD 298
            G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 477 PGGTARCSRHWRGGPLHAASQTHH 406
           PGG  R  R   G P+H A + HH
Sbjct: 80  PGGRRRRPRRVEGAPVHRARRLHH 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,110
Number of Sequences: 37544
Number of extensions: 368107
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)