Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E22
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   165   5e-41
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  165 bits (400), Expect = 5e-41
 Identities = 80/119 (67%), Positives = 90/119 (75%)
 Frame = +2

Query: 41  RFSLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 220
           R  LSSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMR
Sbjct: 57  REHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMR 116

Query: 221 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 397
           GA+GKPQG VARV IG  + S+R  +      IEA RRAKFKFPG    +  ++ GF K
Sbjct: 117 GAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTK 175



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 28/50 (56%), Positives = 38/50 (76%)
 Frame = +3

Query: 351 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 500
           P RQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +3

Query: 336 PSSSSPXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQA 515
           P+   P R  +    +W F +Y   +FE  +      ND  IV+  P +G  D    +  
Sbjct: 118 PNVYEPERDPVVFKPQWPFPEYCASKFEAEKLVKSAPNDCYIVRCVPTYGEGDDC-SILT 176

Query: 516 EILNV*SDQYILLL 557
           +++   +D+ IL L
Sbjct: 177 DLIYFSNDKTILFL 190


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 307 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 185
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 237 GLPNAPRIPVWSLSAPA 187
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,252
Number of Sequences: 27780
Number of extensions: 289098
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)