Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E21
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    45   2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    30   0.50 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    28   1.5  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    28   2.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   2.7  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   4.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   4.7  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   4.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   8.2  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 493 PVNPYGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLALLCGTLAWL 633
           P  PY  Q   +  +  +I   +  + ESPTG+GK+L+L+C +L WL
Sbjct: 16  PYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTGKSLSLICASLTWL 62


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 538 IKTIKAAQNCLLESPTGSGKTLALLCGTLAWLQAEI 645
           I TI + ++ L  +PTGSGKT+A L   L  LQ  +
Sbjct: 77  IPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV 112


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +1

Query: 430 QMGPRKQNEITIM-IAGVKVNLPVNPYGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLA 606
           QM   K  EI+ M I   K  L        ++L++ +    K  +N L+ +PTG+GKT  
Sbjct: 252 QMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPI--AYKTNENMLICAPTGAGKTDV 309

Query: 607 LLCGTLAWLQAEIERIN 657
            L   L  +   +E +N
Sbjct: 310 ALLAMLQTISNYVESMN 326


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 345  DSPFKGKPTVKSTKKSEVIKKLFTKEKSPDGPPXAK*N 458
            +SP K KPT K  K++  + +  T +K+P  P  +K N
Sbjct: 895  ESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVESKIN 932


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 505 YGTQKALIHQVIKTIKAAQNCLLESPTGSGKTLALLCGTLAWLQA 639
           + T   +  + I  + A ++ L  + TGSGKTLA L  T+  L A
Sbjct: 109 FETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA 153


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 487 NLPVNPYGTQKALIHQVIKTIKAAQN 564
           N P NPYG  K  I  +IK +  + N
Sbjct: 151 NDPTNPYGKTKYAIENIIKDLHTSDN 176


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +1

Query: 631 LQAEIERINKLQMESY---FEEIFENKMDDSAGNANNRKHVDNXFTSEVSFAKPEYGKKA 801
           +++ I  +N    E Y    EE  ++  D +A NA     V      E+  A+P+  +K 
Sbjct: 90  VESMIGDVNMFLTEEYADGIEEFDDSPSDANATNATKESEVHIVGELELMIAEPQNRRKG 149

Query: 802 YTVTKVVSPA*H 837
           Y  TK+V    H
Sbjct: 150 YG-TKIVDAFLH 160


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +1

Query: 559 QNCLLESPTGSGKT-LALLC 615
           +N LL +PTG+GKT +A+LC
Sbjct: 536 ENILLCAPTGAGKTNVAMLC 555


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 544 TIKAAQNCLLESPTGSGKTLALLCGTLAWLQ 636
           ++ A    LLE P+G+GKT++LL   +++ Q
Sbjct: 31  SLDAGGIALLEMPSGTGKTISLLSLIVSYQQ 61


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 348 SPFKGKPTVKSTKKSEVIKKLFTKEKSPDGPPXAK*NNDYDSRSESESTSKPLWDSEGVD 527
           SP   K +VK  KKS+  KK   +E S +    +  +    S SESES+S     S    
Sbjct: 63  SPEPSKKSVKKQKKSK--KK---EESSSESESESSSSESESSSSESESSSSESESSSSES 117

Query: 528 TSGNKDHK 551
           +S   + +
Sbjct: 118 SSSESEEE 125


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 387 KSEVIKKLFTKEKSPDGPPXAK*NNDYDSRSESESTSKPLWDSEGVDTSGNKDH 548
           +S+  K+ F  +K P+       +ND +S+ E  S+ KP +  E  +    K H
Sbjct: 20  RSKFDKRPFASQKFPENLVPDNSSNDANSQPEEVSSKKPWYVDEKHNLFPKKAH 73


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 746 TIXSPLKCPSPSLNTVKKHIQSRKSYRQPSM 838
           ++ +PL  P P  NT+ K +   K    P +
Sbjct: 462 SVDNPLDIPKPLTNTINKFVNQSKDNLNPDL 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,783
Number of Sequences: 5004
Number of extensions: 57143
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)