Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E20
         (1170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.6  
Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    29   6.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 1033 PPPPXXXXGXXXPPXFFXXKKNFXGXNSXPPXPGXF 926
            PPPP    G   PP        F G    PP PG F
Sbjct: 758  PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 1033 PPPPXXXXGXXXPPXFFXXKKNFXGXNSXPPXPGXF 926
            PPPP    G   PP        F G    PP PG F
Sbjct: 758  PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 1033 PPPPXXXXGXXXPPXFFXXKKNFXGXNSXPPXPGXF 926
            PPPP    G   PP        F G    PP PG F
Sbjct: 341  PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376


>Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical
           protein C12D8.8 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 237 PXXXLGXPAPKXFSGKXXXP-FSGPLAXXSGPFLXGPPXXGEKPGXWG 377
           P   +G   P    G+   P +SGP      P L GPP    +PG  G
Sbjct: 153 PVGAIGPMGPIGSMGRAGQPGYSGPRGNDGFPGLPGPPGENGQPGQSG 200


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
 Frame = +3

Query: 129 PXXPXG--GXSWXXSFPXFSGXNXXXGXXSXPGNPRX*-PXXXLGXPAPKXFSGKXXXPF 299
           P  P G  G +     P   G +   G    PG P    P    G P      G+   P 
Sbjct: 182 PPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPG 241

Query: 300 SGPLAXXSGPFLXGPPXXGEKPGXWGLXNAXNAXP 404
           +  +    GP   GPP     PG  G   A    P
Sbjct: 242 TNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGP 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.145    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,182
Number of Sequences: 27780
Number of extensions: 263931
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)