Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E18
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0067 - 20460206-20460703,20461255-20461530                       33   0.40 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   2.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.8  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   6.6  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   6.6  
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582...    29   6.6  

>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 487 PPXXXGGGPPXPXFFFXXGXPXPPPXGGAGPXXP 386
           PP     GPP P  +F  G P PPP    G   P
Sbjct: 6   PPPQWAMGPPPPPQYFQAGPPPPPPQYFQGAHPP 39


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 487  PPXXXGGG--PPXPXFFFXXGXPXPPPXGGAG 398
            PP   G G  PP P      G P PPP GG G
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVPPPPPIGGLG 1131



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -1

Query: 487  PPXXXGGGPPXPX--FFFXXGXPXPPPXGGAGPXXP 386
            PP    GGPP P     F  G P P   GG  P  P
Sbjct: 1152 PPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPP 1187



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 487  PPXXXGGGPPXPXFFFXXGXPXPPPXGGAGPXXP 386
            PP    GG P P        P PPP G  G   P
Sbjct: 1165 PPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 484  PXXXGGGPPXPXFFFXXGXPXPPPXGG 404
            P   GG PP P      G P PPP  G
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPPAG 1168


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -1

Query: 487 PPXXXGGGPPXPXFFFXXGXPXPPPXGG--AGPXXP 386
           PP     GPP P        P PPP GG   GP  P
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 487 PPXXXGGGPPXPXFFFXXGXPXPPPXGGA 401
           PP      PP P      G P PPP GGA
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPPPPKGGA 386


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 487 PPXXXGGGPPXPXFFFXXGXPXPPPXGGAGP 395
           PP   G  PP P      G P PPP  G+ P
Sbjct: 617 PPRPPGAPPPPPPPGKPGGPPPPPPRPGSLP 647


>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 487  PPXXXGGGPPXPXFFFXXGXPXPPPXGGAGP 395
            PP   G  PP P      G P PPP  G+ P
Sbjct: 922  PPRPPGAPPPPPPPGKPGGPPPPPPPPGSLP 952


>01_01_0754 -
           5823076-5823089,5823797-5823911,5823992-5824045,
           5825629-5827251
          Length = 601

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 463 PPXPXFFFXXGXPXPPPXGGAGP 395
           PP P  FF    P  PP G  GP
Sbjct: 47  PPPPTTFFEVDRPIRPPRGSVGP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,448
Number of Sequences: 37544
Number of extensions: 210324
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)