Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E15
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    76   6e-15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    45   2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    40   5e-04
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    39   8e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    38   0.001
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    37   0.003
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    31   0.28 
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   6.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   7.9  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   7.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   7.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 41/67 (61%), Positives = 46/67 (68%)
 Frame = +1

Query: 151 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGKAPPSGRDGRYGTEXNXXYCXGRNE 330
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS  G+  P       G      Y    +E
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR--PRHHGIMVGMGQKDSYVG--DE 57

Query: 331 AQSKRGI 351
           AQSKRGI
Sbjct: 58  AQSKRGI 64



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 32/54 (59%), Positives = 36/54 (66%)
 Frame = +3

Query: 366 YPIEHGIVTNWDDMEKIWHHTFXQXKLRFXPPKETPPVXGSXGGPLNPKXXXKK 527
           YPIEHGIV NWDDMEKIWHHTF   +LR   P+E P +      PLNPK   +K
Sbjct: 69  YPIEHGIVNNWDDMEKIWHHTFYN-ELR-VAPEEHPCLLTE--APLNPKSNREK 118


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 169 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
           + +DNGSG  KAGFAGDD P+ +FP+  G+
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 369 PIEHGIVTNWDDMEKIWHHTFXQXKLRFXP 458
           PIE GI+ NW DME+IW + +   +L   P
Sbjct: 74  PIERGIIQNWSDMEEIWSYIYSDQQLNTLP 103


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +1

Query: 154 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
           +EV+A+V+D GS   + GF+G+D P+ V PS  G+
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +1

Query: 157 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
           E A +V+DNG+G  K G+A D+ PR  FPS  G+
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = +3

Query: 366 YPIEHGIVTNWDDMEKIWHHTFXQXKLRFXP 458
           YP+E+GI+ ++++M ++W +TF + KL+  P
Sbjct: 69  YPMENGIIRDFEEMNQLWDYTFFE-KLKIDP 98


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 169 LVVDNGSGMCKAGFAGDDAPRAVFPS 246
           +++DNG+G  K G+AG+DAP  VFP+
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPT 33



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 366 YPIEHGIVTNWDDMEKIWHHTFXQXKLRFXP 458
           YPI HG + NWD ME+ W  +  +  LR  P
Sbjct: 92  YPIRHGQIENWDHMERFWQQSLFKY-LRCEP 121


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 154 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRG-KAPPSGRD 279
           EE+ +LV+D GS   + G+AG+++P  + PS  G ++  +GR+
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRN 50


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 169 LVVDNGSGMCKAGFAGDDAPRAVF 240
           LV+DNGS   +AG+ G+  P+ VF
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVF 50



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 369 PIEHGIVTNWDDMEKIWHHTF 431
           P E  +++NWD ME++  +TF
Sbjct: 86  PFERNVISNWDLMEQVLDYTF 106


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 384 IVTNWDDMEKIWHHTFXQXKLRFXPPKETPP 476
           + T+ D +  +W H      L++  PK  PP
Sbjct: 368 LTTSIDGVMNVWDHRMVDSVLKYPVPKGVPP 398


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 196 TYRSHCLLPTRQLLRRTS*ISEI 128
           TYR H  +PT  LL  T  +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 334 VPHFFXNNKXXSXLSHTDHHALMAGPSH 251
           V H F  N+    L+H DHH L     H
Sbjct: 329 VIHDFLQNRGIKQLAHGDHHHLYLTSDH 356


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 369 PIEHGIVTNWDDMEKIWHHTF 431
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,448
Number of Sequences: 5004
Number of extensions: 34527
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)