Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E14
         (1035 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.24 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.31 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 862 PPPXPPPPP 888
           PPP PPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 26.2 bits (55), Expect(2) = 0.24
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 865 PPXPPPPPP 891
           PP PPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 0.24
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 862 PPPXPPPP 885
           PPP PPPP
Sbjct: 761 PPPPPPPP 768


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.31
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 862 PPPXPPPPP 888
           PPP PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 865 PPXPPPPPP 891
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 0.31
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 865 PPXPPPPPP 891
           P  PPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 865 PPXPPPPPPXXXF 903
           PP PPPPPP   F
Sbjct: 306 PPPPPPPPPSNDF 318



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 862 PPPXPPPPP 888
           PPP PPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 862 PPPXPPPPPPXXXF 903
           PP  PPPPPP   F
Sbjct: 5   PPGNPPPPPPPPGF 18



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 862 PPPXPPPPPP 891
           PP  PPPPPP
Sbjct: 20  PPSQPPPPPP 29


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 862 PPPXPPPPP 888
           PPP PPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 865 PPXPPPPPP 891
           PP PPPPPP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,607
Number of Sequences: 5004
Number of extensions: 10743
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)