Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E12
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    29   3.3  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
 Frame = +3

Query: 594 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEVGH---EIGALSKALDTQKQLAER 746
           ++H+    G ++ +S  TLK +   NY      + E+ H   EI  L+ +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 747 ISSSTGKSL*TATSSTMPRSLNTSRRNSV 833
           +   TG    ++  +    S  TS  N +
Sbjct: 96  LIMMTGDDK-SSIHTVSSHSTTTSTTNPI 123


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
 Frame = +3

Query: 594 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEVGH---EIGALSKALDTQKQLAER 746
           ++H+    G ++ +S  TLK +   NY      + E+ H   EI  L+ +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 747 ISSSTGKSL*TATSSTMPRSLNTSRRNSV 833
           +   TG    ++  +    S  TS  N +
Sbjct: 96  LIMMTGDDK-SSIHTVSSHSTTTSTTNPI 123


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 583 VFSHESSDNFPEELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 455
           V S + SD   EE+ E   V LV++ +GGR   +VGT ++  G
Sbjct: 77  VNSTDGSDE-EEEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 331 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 426
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,162
Number of Sequences: 27780
Number of extensions: 369993
Number of successful extensions: 1043
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)