Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    44   4e-05
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    42   1e-04
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    33   0.041
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   2.7  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   6.2  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.2  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   6.2  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
 Frame = +1

Query: 178 MAEVKAFNAELSGLYDNKPPISKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEYKV 357
           M+ +  F+  L  L  +K  IS +K+  +T  +++ +      V SV K+ ++    +K+
Sbjct: 1   MSGIAEFDGILDSLEHSKTGISGSKILKLTNLSMENVSENAQFVASVYKYAKRAPVTHKL 60

Query: 358 PGLYVIDSIVR-------QSRHQFGQDKDV-FAPRFAKNMQQTFA----NLFRCPAEDKR 501
             LY++DSIVR       ++   F    D  F+  + K  + T +     +   P+    
Sbjct: 61  GALYILDSIVRSFQDGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHAPSAHLP 120

Query: 502 NIIRVLNLWQKNNVFSPQVIQPL 570
            I+++ ++W+K + F P+ ++ L
Sbjct: 121 KILKLCDIWEKASTFPPEKLESL 143


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = +1

Query: 172 MDMAEVKAFNAELSGLYDNKPPISKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEY 351
           MD+ E+   +A L  L  N  PI    +  +T  A +   +   +V+++EK IQKC P  
Sbjct: 1   MDLVELDYLSA-LEDLTFNSKPI----IHTLTYIAQENEPYAISIVNAIEKHIQKCPPNC 55

Query: 352 KVPGLYVIDSI 384
           K+P LY++DSI
Sbjct: 56  KLPALYLLDSI 66


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +1

Query: 364 LYVIDSIVRQSR-HQFGQDKDVFAPRFAKNMQQTFANLFRCPAEDKRNIIRVLNLWQKNN 540
           LY+++ +V+QSR  +  +  D  +P    ++   +A++   PA  K  I  V ++W +  
Sbjct: 59  LYLLNEVVQQSRVKKISEYIDAVSPYVVNSVADAYASV---PASIKTKIKYVFDVWCQRG 115

Query: 541 VFSPQVIQPL 570
           +FS +++  L
Sbjct: 116 IFSKEILLSL 125


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = +1

Query: 277 IKAIKFYKHVVHSVEKFIQKCKPEYKVPGLYV 372
           +  +K Y+ ++H + ++++   P Y +P + V
Sbjct: 809 VNGLKKYRKLIHDIREYLKTKLPSYAIPSVIV 840


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 342 FAFLYKLFNTVHDVFIKLYGLYSTFSDST 256
           F   Y +F+T H+V I  +G  ++FS +T
Sbjct: 167 FGDRYAIFSTPHNVKILAFGFVNSFSGAT 195


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 547 SPQVIQPLLDMADPNHPLHQEIQQNNANGSSLXLTS 654
           +P  +QP   +A+ + P +  I  NN + +   L+S
Sbjct: 48  TPDTLQPFTKLAEEDFPYYARISGNNVDRAEASLSS 83


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +1

Query: 367 YVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFA----NLFRCPAEDKRNIIRVLNLWQK 534
           ++ ++I  +   +  +  D+F  R    + +        L +CP   K + +R+      
Sbjct: 51  WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP---KLHTVRL-----S 102

Query: 535 NNVFSPQVIQPLLDMADPNHPLHQEIQQNNANG 633
           +N F P   +PL+D    + PL      NN  G
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,162
Number of Sequences: 5004
Number of extensions: 61304
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)