Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E10
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...   135   5e-32
U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical p...    42   4e-04
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    42   4e-04
L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical p...    31   1.1  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score =  135 bits (326), Expect = 5e-32
 Identities = 69/136 (50%), Positives = 88/136 (64%)
 Frame = +1

Query: 172 MDMAEVKAFNAELSGLYDNKPPISKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEY 351
           M+   +K+FN ELS L+D+K  +SK K+  ITK AIKA   YKHVV SVEK I KCKP+ 
Sbjct: 1   METEVMKSFNNELSSLFDSKN-MSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKPDQ 59

Query: 352 KVPGLYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPAEDKRNIIRVLNLWQ 531
           ++  LYVIDSIVR S+HQ  ++KD F PRF K   +    L +C  ++K   +R LNLW 
Sbjct: 60  RLNVLYVIDSIVRASKHQL-KEKDTFGPRFMKQFDKFLMPLLKCGQKEKMRTVRTLNLWM 118

Query: 532 KNNVFSPQVIQPLLDM 579
            N VF    IQPL +M
Sbjct: 119 SNKVFKESEIQPLREM 134


>U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical
           protein R144.2b protein.
          Length = 285

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
 Frame = +1

Query: 241 SKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDK 420
           +K +++ +T  A    K    +V  +E+ +  C P  K+  +YV DSI++  +     D 
Sbjct: 22  NKTQINLLTILADDFKKAAPQIVEVIERHLTTCSPSQKLLVMYVCDSILKNVKKP--NDY 79

Query: 421 DVFAPRFAKNMQQTFANLFRCPAEDKR-NIIRVLNLWQKNNVFSPQVIQPL---LDMADP 588
           D     FA+ +   F + FR   E  R ++ R+   W    +F P  +  L   ++  DP
Sbjct: 80  DAL---FARKIVSMFEHAFRQGDERIRTSLYRIRVTWASTTLFMPSKLYELDMKINKLDP 136

Query: 589 NHPL 600
           N P+
Sbjct: 137 NWPI 140


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
 Frame = +1

Query: 241 SKAKMSAITKGAIKAIKFYKHVVHSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDK 420
           +K +++ +T  A    K    +V  +E+ +  C P  K+  +YV DSI++  +     D 
Sbjct: 22  NKTQINLLTILADDFKKAAPQIVEVIERHLTTCSPSQKLLVMYVCDSILKNVKKP--NDY 79

Query: 421 DVFAPRFAKNMQQTFANLFRCPAEDKR-NIIRVLNLWQKNNVFSPQVIQPL---LDMADP 588
           D     FA+ +   F + FR   E  R ++ R+   W    +F P  +  L   ++  DP
Sbjct: 80  DAL---FARKIVSMFEHAFRQGDERIRTSLYRIRVTWASTTLFMPSKLYELDMKINKLDP 136

Query: 589 NHPL 600
           N P+
Sbjct: 137 NWPI 140


>L14745-11|AAA27919.2|  315|Caenorhabditis elegans Hypothetical
           protein C02F5.4 protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/84 (22%), Positives = 39/84 (46%)
 Frame = +1

Query: 364 LYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPAEDKRNIIRVLNLWQKNNV 543
           LYV + + + +R    Q KD F P    + +       +   E +  I +++N+W+   +
Sbjct: 61  LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIE--LKNAKEVEHAIGKLINVWKDRQI 118

Query: 544 FSPQVIQPLLDMADPNHPLHQEIQ 615
           F+P   + L       H +HQ+++
Sbjct: 119 FTPSQCKRL-------HEVHQQVK 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,130
Number of Sequences: 27780
Number of extensions: 350060
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)