Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E08
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    97   2e-21

>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 60/116 (51%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
 Frame = +1

Query: 496 TAHQSNRGL*CFGFDAMCCISSRKKIX-RFFXPMFPRXLYPFLXXASKXXXLEYLRLTSL 672
           T   SNR   C     + CI+S  +    F        LYPFL   SK    EYLRLTSL
Sbjct: 75  TGPTSNRV--CNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSL 132

Query: 673 GVIGALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
           GVIGALV  D   V   LL+TEI+ LCLRIMENGSELSKTVA FI+Q      V L
Sbjct: 133 GVIGALVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGL 188



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +3

Query: 312 IYSCXLELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIYVAXMPP- 488
           +Y   ++L +  +R +       K     DLA +LWH  G + ALLQEI ++Y    PP 
Sbjct: 14  VYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPT 73

Query: 489 XXDCSSEQPWSVMLWL*CNVLHLIQKEDXAFLXAHV 596
               +S +  + +  L C   H   +    FL AH+
Sbjct: 74  LTGPTSNRVCNALALLQCIASH--PETRIHFLNAHI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,465
Number of Sequences: 5004
Number of extensions: 34283
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)