Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E08
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0921 + 22606287-22606490,22607139-22607210,22607433-226075... 100 2e-21
04_04_1133 - 31132835-31132942,31133046-31133115,31133201-311333... 100 2e-21
03_06_0207 - 32356951-32357058,32357187-32357256,32357363-323575... 100 3e-21
02_02_0573 + 11692549-11692659,11693921-11693992,11694251-116943... 80 2e-15
02_02_0541 - 11339269-11339376,11339511-11339580,11339679-113398... 78 1e-14
>07_03_0921 +
22606287-22606490,22607139-22607210,22607433-22607522,
22607694-22607736,22608151-22608257,22608848-22608943,
22609543-22609733,22609819-22609888,22609992-22610099
Length = 326
Score = 100 bits (239), Expect = 2e-21
Identities = 73/172 (42%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Frame = +1
Query: 343 PTLGENALX*LSXKREVV-----LTWRQCCGIXXVQSXLSYRKXPTYTWX*CLRAXTAHQ 507
P L ENAL LS KRE+ L W + + + Y+ L T
Sbjct: 56 PELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEI----VSIYS---ALSPPTLSP 108
Query: 508 SNRGL*CFGFDAMCCISSRKKIXRFFXPM-FPRXLYPFLXXASKXXXLEYLRLTSLGVIG 684
C + C++S + F P LYPFL SK EYLRLTSLGVIG
Sbjct: 109 GASNRVCNALALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIG 168
Query: 685 ALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
ALV D V LL TEI+ LCLR ME GSELSKTVATFI+Q I L V L
Sbjct: 169 ALVKVDDTEVISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGL 220
Score = 60.5 bits (140), Expect = 2e-09
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 LELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIYVAXMPPXXD-CS 503
L+LC+P+ R K DLAP+LWH GT+ ALLQEI +IY A PP +
Sbjct: 51 LDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGA 110
Query: 504 SEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP 599
S + + + L C H + FL AH+P
Sbjct: 111 SNRVCNALALLQCVASH--PETRILFLTAHIP 140
>04_04_1133 -
31132835-31132942,31133046-31133115,31133201-31133391,
31133991-31134086,31134676-31134782,31135197-31135239,
31135411-31135500,31135723-31135794,31136443-31136646
Length = 326
Score = 100 bits (239), Expect = 2e-21
Identities = 73/172 (42%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Frame = +1
Query: 343 PTLGENALX*LSXKREVV-----LTWRQCCGIXXVQSXLSYRKXPTYTWX*CLRAXTAHQ 507
P L ENAL LS KRE+ L W + + + Y+ L T
Sbjct: 56 PELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEI----VSIYS---ALSPPTLSP 108
Query: 508 SNRGL*CFGFDAMCCISSRKKIXRFFXPM-FPRXLYPFLXXASKXXXLEYLRLTSLGVIG 684
C + C++S + F P LYPFL SK EYLRLTSLGVIG
Sbjct: 109 GASNRVCNALALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIG 168
Query: 685 ALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
ALV D V LL TEI+ LCLR ME GSELSKTVATFI+Q I L V L
Sbjct: 169 ALVKVDDTEVISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGL 220
Score = 60.5 bits (140), Expect = 2e-09
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 LELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIYVAXMPPXXD-CS 503
L+LC+P+ R K DLAP+LWH GT+ ALLQEI +IY A PP +
Sbjct: 51 LDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGA 110
Query: 504 SEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP 599
S + + + L C H + FL AH+P
Sbjct: 111 SNRVCNALALLQCVASH--PETRILFLTAHIP 140
>03_06_0207 -
32356951-32357058,32357187-32357256,32357363-32357553,
32358011-32358106,32359014-32359120,32359470-32359512,
32359806-32359895,32360025-32360096,32362390-32362605
Length = 330
Score = 99.5 bits (237), Expect = 3e-21
Identities = 77/173 (44%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Frame = +1
Query: 343 PTLGENALX*LSXKREVV-----LTWRQCCGIXXV-QSXLSYRKXPTYTWX*CLRAXTAH 504
P L ENAL LS KRE+ L W I + Q +S P+ + +
Sbjct: 60 PELRENALLDLSKKREIFQDLAPLLWHSYGTIAALLQEIVSI--YPSLSPP----TLSPG 113
Query: 505 QSNRGL*CFGFDAMCCISSRKKIX-RFFXPMFPRXLYPFLXXASKXXXLEYLRLTSLGVI 681
SNR C + C++S F P LYPFL SK EYLRLTSLGVI
Sbjct: 114 ASNRV--CNALALLQCVASHSDTRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVI 171
Query: 682 GALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
GALV D V LL TEI+ LCLR ME GSELSKTVATFI+Q I L V L
Sbjct: 172 GALVKVDDSEVIGFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGL 224
Score = 59.3 bits (137), Expect = 4e-09
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 LELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIYVAXMPPXXD-CS 503
L+LC+P+ R K DLAP+LWH GTI ALLQEI +IY + PP +
Sbjct: 55 LDLCDPELRENALLDLSKKREIFQDLAPLLWHSYGTIAALLQEIVSIYPSLSPPTLSPGA 114
Query: 504 SEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP 599
S + + + L C H FL AH+P
Sbjct: 115 SNRVCNALALLQCVASH--SDTRIPFLNAHIP 144
>02_02_0573 +
11692549-11692659,11693921-11693992,11694251-11694340,
11694456-11694498,11694741-11694847,11696834-11696929,
11697359-11697549,11697649-11697718,11697937-11698044
Length = 295
Score = 80.2 bits (189), Expect = 2e-15
Identities = 48/106 (45%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +1
Query: 526 CFGFDAMCCISSRKKIX-RFFXPMFPRXLYPFLXXASKXXXLEYLRLTSLGVIGALVXTD 702
C + C++S + F P L FL SK EYLRLTSLGVIGALV +
Sbjct: 84 CNALALLQCVASHPETRSHFLKAHIPLYLCSFLENTSKTRPFEYLRLTSLGVIGALVKAE 143
Query: 703 XXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
V LL E + LCL M GSELSKTVATFI++ I L L
Sbjct: 144 GTEVINFLLQYEFVPLCLHAMAVGSELSKTVATFIIEKIVLDDAGL 189
Score = 53.2 bits (122), Expect = 3e-07
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 LELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIYVAXMPPXXD-CS 503
L+L +PD R K DLAP+LWH GTI LLQEI +Y PP +
Sbjct: 20 LDLLDPDLRGHALAELRKKREMFPDLAPLLWHSFGTIIVLLQEIIVVYPVLSPPTLSLLA 79
Query: 504 SEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP 599
S + + + L C H + FL AH+P
Sbjct: 80 SSRVCNALALLQCVASH--PETRSHFLKAHIP 109
>02_02_0541 -
11339269-11339376,11339511-11339580,11339679-11339869,
11341063-11341158,11342444-11342550,11343468-11343510,
11343591-11343680,11343943-11344005
Length = 255
Score = 77.8 bits (183), Expect = 1e-14
Identities = 46/99 (46%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +1
Query: 526 CFGFDAMCCISSRKKIX-RFFXPMFPRXLYPFLXXASKXXXLEYLRLTSLGVIGALVXTD 702
C + CI+S + F P L FL K EYLRLTSLGVIGALV D
Sbjct: 44 CNALALLQCIASHSETRTHFLQARIPLYLCAFLETDDKAKQFEYLRLTSLGVIGALVKVD 103
Query: 703 XXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXI 819
+ LL E + LCL M GSELSKTVATFI + I
Sbjct: 104 DPKIINFLLENEFVPLCLHNMTIGSELSKTVATFITEKI 142
Score = 35.9 bits (79), Expect = 0.043
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 518 VCNALALMQCVASHPERRS 574
VCNALAL+QC+ASH E R+
Sbjct: 43 VCNALALLQCIASHSETRT 61
Score = 35.1 bits (77), Expect = 0.076
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 399 DLAPMLWHXXGTIXALLQEIXNIYVAXMPPXXDC-SSEQPWSVMLWL*CNVLHLIQKEDX 575
+LA +LW+ G + +LLQEI +Y A PP +S + + + L C H +
Sbjct: 4 NLALLLWNSFGIVASLLQEIIVVYPALSPPTLSLGASNRVCNALALLQCIASH--SETRT 61
Query: 576 AFLXAHVP 599
FL A +P
Sbjct: 62 HFLQARIP 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,313
Number of Sequences: 37544
Number of extensions: 222325
Number of successful extensions: 340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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