Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E08
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87957-1|BAA13508.1|  299|Homo sapiens protein ( Homo sapiens ge...   116   1e-25
BC007102-1|AAH07102.2|  285|Homo sapiens RQCD1 protein protein.       114   5e-25

>D87957-1|BAA13508.1|  299|Homo sapiens protein ( Homo sapiens gene
           for protein involved in sexual development, complete
           cds. ).
          Length = 299

 Score =  116 bits (279), Expect = 1e-25
 Identities = 71/130 (54%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
 Frame = +1

Query: 496 TAHQSNRGL*CFGFDAMCCISSRKKIXR-FFXPMFPRXLYPFLXXASKXXXLEYLRLTSL 672
           TAHQSNR   C     + C++S  +    F     P  LYPFL   SK    EYLRLTSL
Sbjct: 83  TAHQSNRV--CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSL 140

Query: 673 GVIGALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDLXXXX 852
           GVIGALV TD   V   LLTTEI+ LCLRIME+GSELSKTVATFILQ I L    L    
Sbjct: 141 GVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYIC 200

Query: 853 NL*Q-ISHVA 879
              +  SHVA
Sbjct: 201 QTYERFSHVA 210



 Score = 73.3 bits (172), Expect = 1e-12
 Identities = 46/109 (42%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
 Frame = +3

Query: 291 AAVXREXIYSCXLELCNPDTR*KCAXITEXKTRSGSDLAPMLWHXXGTIXALLQEIXNIY 470
           A V RE IY    EL +P+TR         K  S  DLAPMLWH  GTI ALLQEI NIY
Sbjct: 15  AQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIY 74

Query: 471 VAXMPPXXDC-SSEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP*IXLP 614
            +  PP      S +  + +  L C   H   +   AFL AH+P    P
Sbjct: 75  PSINPPTLTAHQSNRVCNALALLQCVASH--PETRSAFLAAHIPLFLYP 121


>BC007102-1|AAH07102.2|  285|Homo sapiens RQCD1 protein protein.
          Length = 285

 Score =  114 bits (274), Expect = 5e-25
 Identities = 70/130 (53%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
 Frame = +1

Query: 496 TAHQSNRGL*CFGFDAMCCISSRKKIXR-FFXPMFPRXLYPFLXXASKXXXLEYLRLTSL 672
           TAHQSNR   C     + C++S  +    F     P  LYPFL   SK    EYLRLTSL
Sbjct: 110 TAHQSNRV--CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSL 167

Query: 673 GVIGALVXTDXXXVXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDLXXXX 852
           GV GALV TD   V   LLTTEI+ LCLRIME+GSELSKTVATFILQ I L    L    
Sbjct: 168 GVTGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYIC 227

Query: 853 NL*Q-ISHVA 879
              +  SHVA
Sbjct: 228 QTYERFSHVA 237



 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 48/124 (38%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
 Frame = +3

Query: 246 NMINMSAKQSPANMQAAVXREXIYSCXLELCNPDTR*KCAXITEXKTRSGSDLAPMLWHX 425
           NM +++         A V RE IY    EL +P+TR         K  S  DLAPMLWH 
Sbjct: 27  NMHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHS 86

Query: 426 XGTIXALLQEIXNIYVAXMPPXXDC-SSEQPWSVMLWL*CNVLHLIQKEDXAFLXAHVP* 602
            GTI ALLQEI NIY +  PP      S +  + +  L C   H   +   AFL AH+P 
Sbjct: 87  FGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH--PETRSAFLAAHIPL 144

Query: 603 IXLP 614
              P
Sbjct: 145 FLYP 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,688,653
Number of Sequences: 237096
Number of extensions: 1258278
Number of successful extensions: 1467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)