Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E08
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    98   6e-21

>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 63/120 (52%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
 Frame = +1

Query: 496 TAHQSNRGL*CFGFDAMCCISSRKKIXR-FFXPMFPRXLYPFLXXASKXXXLEYLRLTSL 672
           TA QSNR   C     M C++S +     F     P  LYPFL         EYLRLTSL
Sbjct: 91  TAAQSNRV--CNALALMQCVASHRDTRGPFLHAHIPLYLYPFLHTTKVSRSFEYLRLTSL 148

Query: 673 GVIGALVXTDXXX----VXXXLLTTEIMXLCLRIMENGSELSKTVATFILQXISLTTVDL 840
           GVIGALV TD       V   LL+TEI+ LCLRIME G+ELSKTVATFILQ I L    L
Sbjct: 149 GVIGALVKTDDKEQLLIVINFLLSTEIIPLCLRIMEQGTELSKTVATFILQKILLDDTGL 208



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
 Frame = +3

Query: 222 SRLTPIVQNMINMSAKQSPANMQAAVXREXIYSCXLELCNPDTR*KCAXITEXKTRSGSD 401
           +R +P  Q     +A  S AN+   +  + I    ++L +P  R         K  S  D
Sbjct: 4   ARASPATQ--AQQTAVPSSANLD--INTDEIMQWIIDLRDPPKREAALLELSKKRDSVPD 59

Query: 402 LAPMLWHXXGTIXALLQEIXNIYVAXMPPXXDCS-SEQPWSVMLWL*CNVLHLIQKEDXA 578
           L   LWH  GT+ ALLQE+  IY A MP     + S +  + +  + C   H  +     
Sbjct: 60  LPIWLWHSFGTMSALLQEVVAIYPAIMPANLTAAQSNRVCNALALMQCVASH--RDTRGP 117

Query: 579 FLXAHVP 599
           FL AH+P
Sbjct: 118 FLHAHIP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,878
Number of Sequences: 27780
Number of extensions: 195479
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)