Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E07
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.13
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 31 0.22
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 30 0.39
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 30 0.51
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.51
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.67
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.89
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.89
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.89
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.7
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 4.8
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 26 8.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 26 8.3
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 31.9 bits (69), Expect = 0.13
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 391 LDLYGSEANAVMVNPNSVMPSNFAETP---VKSVVKEE-ASNVLLSSVANRDSESKHNPT 558
L LYG++A NP+SV+PSN + TP K+V KE N S D+ S
Sbjct: 173 LSLYGNQA----FNPSSVLPSNSSSTPKENKKNVNKETYQPNTFRRSPLKNDTGSVELSN 228
Query: 559 LASPKEEKSHLTFS 600
L P S L S
Sbjct: 229 LYMPSPPSSALPVS 242
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/85 (24%), Positives = 43/85 (50%)
Frame = +1
Query: 370 SSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKH 549
+SS LD S + + PN + + P K++ S+ + + ++NR S+ K
Sbjct: 311 TSSLPEELD--SSTHSPIYTKPNV---DSMHKQPKKAIAPLSLSSSVTAVISNRTSDKKT 365
Query: 550 NPTLASPKEEKSHLTFSPNTIKVSK 624
T+A +++ +HL SP+ + ++K
Sbjct: 366 RSTVAE-EDDITHLNISPDRLYLNK 389
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 MVNPNSVMPSNF-AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLAS 567
++ P P+ F A TP V S+V LSS++N +S H P S
Sbjct: 453 LIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQS 501
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +1
Query: 262 DLSSISDFQDS---FGTNFSDMPPLLDMDTDNCSTWLNNSSSFVHNLDLYGSEANAVMVN 432
DL S+ F + T S ++ D ++C WLN+ SFV Y S N ++
Sbjct: 85 DLKSVLSFLKNNLPVDTESSSEAFTIEKDNNSC-VWLNSVKSFVEKQFSYSSGTNGILAT 143
Query: 433 PNSVMPSN 456
+ +P N
Sbjct: 144 FLTAIPPN 151
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 406 SEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSES 543
SE ++ +++ +S +PS + TP S++ ++VL SS + S S
Sbjct: 505 SEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSS 550
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.5 bits (63), Expect = 0.67
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +1
Query: 358 WLNNSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDS 537
WL+ + +H DLY + A++ PNS++ ++ AE + K EAS L+S +S
Sbjct: 213 WLSERN--IHT-DLYETHASS----PNSLLVTSLAE-----IWKSEASRRNLTSSDETNS 260
Query: 538 ESKHNPTLASPKEEKSH 588
SK + + KEE SH
Sbjct: 261 FSKLHQSQFGLKEESSH 277
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 29.1 bits (62), Expect = 0.89
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 427 VNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPN 606
V P +P A P+K E +SS + + +K N + KEE+ L+FS N
Sbjct: 83 VRPEIPLPPA-APIPMKKASNTEPVEKEISSFFSEEGATKENEDFINEKEEEEDLSFSIN 141
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.89
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = -1
Query: 500 DASSLTTLFTGVSAKFEGITEFGFTITALASDPYKSKL*TKLELLFSHVEQLSVSMSSNG 321
DAS T+FT +S +G T G+TI++ +S S+ T S S +
Sbjct: 739 DASGFNTIFTSISQSSDGETS-GYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSIST 797
Query: 320 GMSEKFVPNES*KSDILLRSV 258
+S + N S S I SV
Sbjct: 798 SVSSQSSMNSSYSSPISSNSV 818
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 460 AETPVKSVVKEEASNVLLSSVANRDSESKHN 552
AE+ V+S K + S LSS N+DSE N
Sbjct: 476 AESKVRSKAKSDKSRAKLSSDTNKDSEKNDN 506
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 537 RIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKKGTR 665
++ S+ + +LNI S+ NK+ SS RG K ++GT+
Sbjct: 11 KVGNTEQVSEKQHTDTALNI-SQDNKTSSSSAKRGAKGRRGTK 52
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 238 DIKNEIATDLSSISDFQDSFGTNFS----DMPPLLDMDTDNCSTWLNNSSSFVHNLD 396
+ KN + LS +F DSF N S ++ P D+ TDN + N+ + H+LD
Sbjct: 47 EFKNNV---LSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASHDLD 100
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 4.8
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Frame = +1
Query: 187 SDMDLYITDSLQDMLDIDIKNEIATDLSSISDFQDSFGTNFSDMPPLLDMDTDNCSTWLN 366
S +DLY +D+ DI I + +D++ + M MD D S L+
Sbjct: 76 STLDLYSSDNAAIDTDISEDETINQRHAPQTDYRYPNTSANPKMGLEESMDIDMPSIDLD 135
Query: 367 NSSSFVHNLDLYGSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLS----SVANRD 534
+ N + ++N + N NS ++ +PV + + SNVL S SV + D
Sbjct: 136 -----ISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTGRTSVLHID 190
Query: 535 SESKHNPTLASPKEEKSHLTFS 600
+E +P ++ + FS
Sbjct: 191 AEQSQTNNTVTPLKDDALSLFS 212
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 451 SNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSKV 627
S+ + VK V K+ S + NRD +SK ASPK +S L + T + KV
Sbjct: 308 SDKKQVTVKEVPKK-LSVKNAAKTTNRDEDSKGKKAKASPKVSQSSLK-ANGTTAIKKV 364
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 484 VKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVS 621
+KE+ + + + DS+ N L+SP EK+ L F N+ + S
Sbjct: 1 MKEQEFSYREAKDVSLDSKGLENSFLSSPNREKTPLFFEGNSNETS 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,080
Number of Sequences: 5004
Number of extensions: 59319
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -