Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E07
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    30   2.2  
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899...    29   3.8  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   8.7  
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    28   8.7  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 388 NLDLYGSEANAVMV-NPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLA 564
           ++D+  +E   V   N   V+P +F+ TP K  +K+  S   LS     + E   N    
Sbjct: 590 DIDILNNEVTPVFNHNEKYVVPDSFSPTPAKQAIKKLISTKNLSQTLEDNIEDCVN---C 646

Query: 565 SPKEEKSHLTFSPNTIKVSKV 627
           S  E+K ++  +   IK + +
Sbjct: 647 SDNEDKENVDTAQQFIKQNSI 667


>05_05_0292 +
           23889536-23889568,23889753-23889828,23889932-23889996,
           23890235-23890294,23890391-23890473,23890584-23890688,
           23890942-23891566,23892008-23892198,23892292-23892400,
           23892602-23892750,23892810-23892824,23893139-23893365,
           23893464-23893477
          Length = 583

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 534 FRIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNK 653
           F ++ +   S+SKRR  + NI     + L +S+++ NKNK
Sbjct: 537 FIVDVEIQESRSKRRSSNTNIRIGAEELLPTSKSKANKNK 576


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 478 SVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIK 615
           S  +E+ S+   S     DSE+  +PT  S  EE S  T + NTI+
Sbjct: 156 SATEEKPSHSTESPTYKGDSEAPQSPTDPSTAEENSGSTETGNTIE 201


>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
 Frame = +1

Query: 211 DSLQDMLDIDIKNEIATDLSSISDFQDSFGTNFSDMPPLLDMDTDNCSTWLNNSSSFVHN 390
           +S+++ +   +   +  D  +I  F D   +  S +  + +   +N   W+N +      
Sbjct: 350 ESVKNAMYTTLSELVQGDYFNIITFNDELHSFSSCLEQVNEKTIENAREWVNTNFIAEGG 409

Query: 391 LDLYG--SEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSES 543
            D+    SEA A++ N ++ +P  F  T      +      +   +A R S+S
Sbjct: 410 TDIMHPLSEAIALLSNSHNALPQIFLVTDGSVEDERNICRTVKEQLATRGSKS 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,899
Number of Sequences: 37544
Number of extensions: 322643
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)