Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E07
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    29   4.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   5.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   5.9  

>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +1

Query: 403 GSEANAVMVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEK 582
           GS A A   +PNS+ PSN   TP      +  +     + A+  +  K   TL    +  
Sbjct: 31  GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAGASASGSANYKLMCTLEGHTKSI 90

Query: 583 SHLTFSP 603
           S   FSP
Sbjct: 91  SSAKFSP 97


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 564 QSKRRKKSLNIFSKHNKSL*SSRNRGNKNKKGTRRGEADGYLRKKK 701
           + KR KKS    + ++K+  +SRN GN+  K TRR  +    R  K
Sbjct: 371 EKKREKKSKKAAAANHKN--ASRNNGNETPKKTRRSSSTTPTRTPK 414


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 283 FQDSFGTNFSDMPPLLDMDTDNCSTWLNNSS 375
           FQ+ FGT+   + P    D  NC  W +  S
Sbjct: 99  FQNEFGTSSYSLHPFFSRDFVNCEPWTSEKS 129


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 460   AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSK 624
             AET V +  K +A      S A +DS+SK +    +  EEKS  T  P   K SK
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKS-TTEKPTNDKTSK 12658


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 460   AETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSK 624
             AET V +  K +A      S A +DS+SK +    +  EEKS  T  P   K SK
Sbjct: 12605 AETEVGAKKKPDAEKPTDLSKAKKDSKSKKSDEPEASTEEKS-TTEKPTNDKTSK 12658


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,467,730
Number of Sequences: 27780
Number of extensions: 319822
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)