Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E05
(941 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0608 + 4515709-4515951,4516085-4516678 43 4e-04
03_06_0316 + 33091194-33091370,33091451-33092155 41 0.002
04_03_0041 + 10046063-10046170,10046284-10046742 37 0.027
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 36 0.035
02_05_0265 + 27267361-27268494 33 0.44
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 31 1.0
09_04_0041 - 14051870-14052430,14052509-14052562 29 5.4
01_01_0658 - 5017219-5018066,5018572-5019085 28 9.4
>07_01_0608 + 4515709-4515951,4516085-4516678
Length = 278
Score = 42.7 bits (96), Expect = 4e-04
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKY----LKNAVESGTLIQT 594
EM+ AI LKER+GSS QAI K+I A + L P RK LK +G L +
Sbjct: 81 EMIMEAIVALKERTGSSSQAIGKHIHANH---GANLPPNFRKLLSGNLKKLTAAGKLAKV 137
Query: 595 KGXGASGSFKLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXP 735
K S + + +A KP + +P + +AA A ++ P
Sbjct: 138 KNSFKLSSTRPAAPAAADAKPKAAP-ATKPKVKTTKAAKPAAKAKAP 183
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 40.7 bits (91), Expect = 0.002
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYL----KNAVESGTLIQT 594
EM++ AIA LKER+GSS AI K++ ++K + L RK L K V +G L +
Sbjct: 59 EMISEAIATLKERTGSSQYAIGKFLEDKHK---DHLPSNFRKQLLVQIKKLVAAGKLTKV 115
Query: 595 KGXGASGSFKL-ESKTSASKKP-GSXIWLVRPGGSSVRAAXGNASSRXPLRQPSK 753
K S+KL ++ A+ KP +P AA A+++ + P+K
Sbjct: 116 K-----NSYKLPPTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAKPKAKAPAK 165
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 36.7 bits (81), Expect = 0.027
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVD-AEKLAPFIRKYLKNAVESGTLIQTKGX 603
EM+ AI LKER+GSS AI KY+ ++ + L+ G L++ K
Sbjct: 36 EMIKEAITVLKERTGSSAHAIAKYMEEKHGASLPANYKKMLSIQLRGFASKGKLVKVKAS 95
Query: 604 GASGSFKLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXPLRQPSKG 756
+S + P +P + + +A++ P + P+ G
Sbjct: 96 YKLSDAAKDSPKAKPAAPAPKAAAPKPAKDAAKPKK-DAAAAKPKKAPAAG 145
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 36.3 bits (80), Expect = 0.035
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 597
EM+ +AI L E+SGS+ AI K+I +Y A + +L ESG LI K
Sbjct: 18 EMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFLK 74
>02_05_0265 + 27267361-27268494
Length = 377
Score = 32.7 bits (71), Expect = 0.44
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 689 PPGRTNQIXEPGFFEAEVFDSSLKDPEAPLPLVCIRVPDSTAFFRY 552
PPG+T + G A V D + P LPL+C ++PDS F R+
Sbjct: 4 PPGKTGRRDAGGTAPA-VEDRWTQLPPELLPLICKKLPDSADFVRF 48
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQ 591
+++ AI +LKE SGS+ I YI QY E + LK V +G LI+
Sbjct: 131 DLILEAIKKLKEPSGSNRTTISSYIEEQY-WPPEDFQRLLSTKLKALVATGKLIK 184
>09_04_0041 - 14051870-14052430,14052509-14052562
Length = 204
Score = 29.1 bits (62), Expect = 5.4
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKVDAEKLAP-FIRKYLKNAVESGTLIQTKGX 603
EM+ +AI L +R+GS+ AI ++I +Y+ P + +L ++G L +K
Sbjct: 18 EMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSKNN 77
Query: 604 GASGSF-KLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXPLRQPSK 753
G L K + P + A ASS P +P K
Sbjct: 78 YFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPPK 128
>01_01_0658 - 5017219-5018066,5018572-5019085
Length = 453
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 682 PGGSSVRAAXGNASS 726
PGGS++RAA GNA+S
Sbjct: 74 PGGSAIRAAAGNAAS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,366,974
Number of Sequences: 37544
Number of extensions: 382217
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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