Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E05
(941 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2 ... 69 6e-12
AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2 ... 69 6e-12
AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 l... 69 6e-12
AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 li... 69 6e-12
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 67 1e-11
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 64 1e-10
AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 li... 62 7e-10
AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4 ... 62 7e-10
AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4 ... 62 7e-10
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 60 2e-09
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 60 2e-09
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 57 2e-08
AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5 ... 55 6e-08
AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 li... 55 6e-08
AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical ... 34 0.17
>AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI+ LKER GSS AI KYI A YKV + K+ +R L V S L+Q+ G
Sbjct: 44 MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 103
Query: 604 GASGSFKLESKTSASKKP 657
GASG F++ K +A+KKP
Sbjct: 104 GASGRFRVAEKAAATKKP 121
>AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI+ LKER GSS AI KYI A YKV + K+ +R L V S L+Q+ G
Sbjct: 44 MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 103
Query: 604 GASGSFKLESKTSASKKP 657
GASG F++ K +A+KKP
Sbjct: 104 GASGRFRVAEKAAATKKP 121
>AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 like
protein 6 protein.
Length = 190
Score = 68.5 bits (160), Expect = 6e-12
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI+ LKER GSS AI KYI A YK+ +K+ +R LK V S L+QT G
Sbjct: 41 MVTAAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGVASKALVQTVGT 100
Query: 604 GASGSFKLESKTSA-SKKP 657
GA+G F++ KT+A +KKP
Sbjct: 101 GATGRFRVAEKTAATAKKP 119
>AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 like
protein 2, isoforma protein.
Length = 241
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI+ LKER GSS AI KYI A YKV + K+ +R L V S L+Q+ G
Sbjct: 94 MVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN 153
Query: 604 GASGSFKLESKTSASKKP 657
GASG F++ K +A+KKP
Sbjct: 154 GASGRFRVAEKAAATKKP 171
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
M+ AI +LK+R G+S QAI K+I+ YK+ + ++ +R+ LK V S L+Q G
Sbjct: 44 MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103
Query: 604 GASGSFKLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXPLRQPS 750
GA+G F++ K +A+KKP + +P + AA A+ ++P+
Sbjct: 104 GANGRFRVPEKAAAAKKPAA---AKKPAAAKKPAAAKKATGEKKAKKPA 149
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
M+ AI +LK+R G+S QAI K+I+ YK+ + ++ +R+ LK V S L+Q G
Sbjct: 44 MIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGS 103
Query: 604 GASGSFKLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXPLRQPS 750
GA+G F++ K +A+KKP + +P + AA A+ ++P+
Sbjct: 104 GANGRFRVPEKAAAAKKPAA---AKKPAAAKKPAAAKKATGEKKAKKPA 149
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 64.5 bits (150), Expect = 1e-10
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +1
Query: 433 VNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGXG 606
+ AI +LK+R G+S QAI K+I+ YK+ + ++ R+ LK V S L+Q +G G
Sbjct: 45 IKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSG 104
Query: 607 ASGSFKLESKTSASKKPGSXIWLVRPGGSSVRAAXGNASSRXPLRQPS 750
A+G F++ K +A+KKP + +P + AA A+ ++P+
Sbjct: 105 ANGRFRVPEKAAAAKKPAA---AKKPAAAKKPAAAKKATGEKKAKKPA 149
>AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 like
protein 4 protein.
Length = 253
Score = 61.7 bits (143), Expect = 7e-10
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
MV AI+ +K+R G S AI KYI +Y + A K+ +RK L +ES +Q G
Sbjct: 58 MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117
Query: 604 GASGSFKLESKT-SASKKPGS 663
GA+G F+L KT S +K P +
Sbjct: 118 GANGRFRLAEKTASVAKSPAA 138
>AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 61.7 bits (143), Expect = 7e-10
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
MV AI+ +K+R G S AI KYI +Y + A K+ +RK L +ES +Q G
Sbjct: 58 MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117
Query: 604 GASGSFKLESKT-SASKKPGS 663
GA+G F+L KT S +K P +
Sbjct: 118 GANGRFRLAEKTASVAKSPAA 138
>AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 61.7 bits (143), Expect = 7e-10
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
MV AI+ +K+R G S AI KYI +Y + A K+ +RK L +ES +Q G
Sbjct: 58 MVTEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGN 117
Query: 604 GASGSFKLESKT-SASKKPGS 663
GA+G F+L KT S +K P +
Sbjct: 118 GANGRFRLAEKTASVAKSPAA 138
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI LKER GSS AI KYI Y V + K+ +R L V S L+Q+ G
Sbjct: 44 MVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGT 103
Query: 604 GASGSFKL-ESKTSASKKP 657
GASG F++ E K +A+KKP
Sbjct: 104 GASGRFRVTEKKAAAAKKP 122
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGX 603
MV +AI LKER GSS AI KYI Y V + K+ +R L V S L+Q+ G
Sbjct: 44 MVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGT 103
Query: 604 GASGSFKL-ESKTSASKKP 657
GASG F++ E K +A+KKP
Sbjct: 104 GASGRFRVTEKKAAAAKKP 122
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKG 600
+M+ AI + +GSS AI KYIA Y V + K+ +R LK AV+SG + QT+G
Sbjct: 42 DMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRG 101
Query: 601 XGASGSFKLESKTSASKKPG 660
GA+GSF++ + + + G
Sbjct: 102 HGATGSFRMGKECEKNLQVG 121
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +1
Query: 427 EMVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKG 600
+M+ AI + +GSS AI KYIA Y V + K+ +R LK AV+SG + QT+G
Sbjct: 42 DMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRG 101
Query: 601 XGASGSFKLESKTSASKKPG 660
GA+GSF++ + + + G
Sbjct: 102 HGATGSFRMGKECEKNLQVG 121
>AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5
protein.
Length = 225
Score = 55.2 bits (127), Expect = 6e-08
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
M+ A++ LK+R GSS AI K+I A+Y + K +R LK V S L+QT G
Sbjct: 44 MITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGI 103
Query: 604 GASGSFKL--ESKTSASKK 654
GA+G F+L K A KK
Sbjct: 104 GANGRFRLAVAEKPPAVKK 122
>AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 like
protein 5 protein.
Length = 225
Score = 55.2 bits (127), Expect = 6e-08
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 MVNSAIAELKERSGSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGX 603
M+ A++ LK+R GSS AI K+I A+Y + K +R LK V S L+QT G
Sbjct: 44 MITEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGI 103
Query: 604 GASGSFKL--ESKTSASKK 654
GA+G F+L K A KK
Sbjct: 104 GANGRFRLAVAEKPPAVKK 122
>AL117206-6|CAB60450.1| 734|Caenorhabditis elegans Hypothetical
protein Y67A10A.9 protein.
Length = 734
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 460 ERSGSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQ 591
E S+ Q K+ +A Y+VD+ L + + YLKNA+E G + Q
Sbjct: 260 ELLSSNGQNFKRSFSAVYRVDSSALRQWEKSYLKNAMEKGDVEQ 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,279
Number of Sequences: 27780
Number of extensions: 313916
Number of successful extensions: 738
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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