Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E03
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    34   0.024
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    31   0.22 
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    29   0.67 
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   3.6  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   4.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   8.3  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
 Frame = +3

Query: 327 SGDPSKPLMIFLHGFPE---FWYSWRYQIME-FKKDYWCIAVDMRGYGDSERVE-DVSAY 491
           +G  +K  ++++HG+     F++     + +   KD+    VD  G G+S R   D+   
Sbjct: 86  TGKANKRSIVYMHGYGAGLGFYFRNMDGLTKGVTKDFNSYFVDWLGMGNSSRPPFDIKGQ 145

Query: 492 KLNLLIDDI-KYLVKEL-------GREKCILVSHDWGGAIANAIRNAYPEIVSALIMLAS 647
             +  +++  ++  + L       G EK ILV H  GG ++      YPE V  L++++ 
Sbjct: 146 TASEKVEETERFFTESLETWRIGHGIEKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSP 205

Query: 648 MS 653
           ++
Sbjct: 206 VA 207


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +3

Query: 432 IAVDMRGYGDSERVEDVSAYKLNLLIDDIKYLVKELGR-----EKCILVSHDWGGAI 587
           +A+D+R +G++  +E  S   L  L  D  + V  + R     EK ILV H  GGAI
Sbjct: 103 LALDLRAHGETT-LEPESDMSLETLSKDFTHAVSYVQRMFELDEKIILVGHSLGGAI 158


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 570 DWGGAIANAIRNAYPEIVSALIMLASMSTAASIHEIWNNSKQFL 701
           D+    A   +N YPEI+   +++ S    A    +W+  K FL
Sbjct: 180 DFARVFAETFQNYYPEILGQALIVGSGFRMALFEGVWSIGKYFL 223


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 438 VDMRGYGDSERVEDVSAYKLNLLIDDIKYLVKE--LGREKCILVSHDWGGAIANAIRNAY 611
           +  RGYG S      +  K++     ++YL++     + K ++     GGA+A A+    
Sbjct: 123 ISYRGYGKSTGSPSEAGLKIDSQTA-LEYLMEHPICSKTKIVVYGQSIGGAVAIALTAKN 181

Query: 612 PEIVSALIM 638
            + +SALI+
Sbjct: 182 QDRISALIL 190


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 327 SGDPSKPLMIFLHGFPEFWYSWRYQIMEFKKDYWCIAVDMRGYGDSERVEDVSAYKLNLL 506
           SG P +  +  L    +F +  R   +   ++ + + +++ GY ++  V+  +AYK   +
Sbjct: 469 SGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACM 528

Query: 507 IDDI--KYLVKEL 539
           + D+   YL++ +
Sbjct: 529 LRDLISPYLLRRM 541


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 336 PSKPLMIFLHGFPEFWYSWRYQIMEFKKDY 425
           PS  LM+F  G P  W    +Q M + +++
Sbjct: 359 PSNGLMVFTSGIPSVWAEIDHQAMAWCENF 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,980
Number of Sequences: 5004
Number of extensions: 64057
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)