Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E02
         (1030 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    45   0.003
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    45   0.004
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    43   0.011
UniRef50_Q9RZS3 Cluster: Putative uncharacterized protein; n=1; ...    34   6.8  
UniRef50_P33485 Cluster: Probable nuclear antigen; n=5; root|Rep...    34   6.8  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +2

Query: 323 VXSALMNRXXRGERRXAYWALXRFLXH 403
           V +ALMNR  RGERR AYWAL RFL H
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.8 bits (101), Expect = 0.004
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = +1

Query: 355 RXEAXCVLGALPLPRSLTHCARSXGCGXRYQLT 453
           R    C  G +PLPRSLT  ARS GCG RY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 43.2 bits (97), Expect = 0.011
 Identities = 21/35 (60%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 CINESXXARXEAXCVLGALPLPRSLTHCARSXGCG 435
           CI +   AR EA  VL ALPL RS T C RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q9RZS3 Cluster: Putative uncharacterized protein; n=1;
           Deinococcus radiodurans|Rep: Putative uncharacterized
           protein - Deinococcus radiodurans
          Length = 936

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 620 GIPRDXXVRGXGXHYXKTSSXXRPLYGSXPFAXLFDH 510
           G+PR+   +  G  Y  +SS   PL GS P A L++H
Sbjct: 262 GLPREDSGKARGLTYGDSSSEAVPLRGSDPVAALYEH 298


>UniRef50_P33485 Cluster: Probable nuclear antigen; n=5; root|Rep:
            Probable nuclear antigen - Pseudorabies virus (strain
            Kaplan) (PRV)
          Length = 1733

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 737  RVREQGGAXRRGXXXGGETGXGNRXXCRSGFXPXSELEPGIPRDXXVRG 591
            RV  +GG   RG    G  G G R  C  G  P +   PG+ R    RG
Sbjct: 1639 RVPPRGGPSPRGCRGAGRAGGGGRGGCGGGRAPGAAGGPGLCRCECCRG 1687


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,623,728
Number of Sequences: 1657284
Number of extensions: 6615889
Number of successful extensions: 10771
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10697
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 98388569807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)